HHsearch alignment for GI: 254780725 and conserved domain: PRK10955
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.19 E-value=3.6e-10 Score=81.66 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=90.0
Q ss_pred EECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf 838989999999886411002022373-0699899999986189984999980598767788999888532899808998
Q gi|254780725|r 34 FCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI 112 (427)
Q Consensus 34 f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi 112 (427)
T Consensus 7 VEDd~~l~~~l~~~-----L~~~G~~V~~a~~g~~al~~l~~--~~DlvilDi~LP~~dG~~l~~~iR~~--~~~PII~l 77 (232)
T PRK10955 7 VDDDRELTSLLKEL-----LEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGIDTLKALRQT--HQTPVIML 77 (232)
T ss_pred EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCEEECC--CCCCEEEE
T ss_conf 96989999999999-----98889999998999999999648--98999991899988867230124407--88878998
Q ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 1687189999999765626431899989999976310233
Q gi|254780725|r 113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 78 ta~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR 117 (232)
T PRK10955 78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR 117 (232)
T ss_pred ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf 0556768899999769757633899989999999999761