HHsearch alignment for GI: 254780725 and conserved domain: PRK10955

>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional.
Probab=99.19  E-value=3.6e-10  Score=81.66  Aligned_cols=110  Identities=15%  Similarity=0.231  Sum_probs=90.0

Q ss_pred             EECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEE
Q ss_conf             838989999999886411002022373-0699899999986189984999980598767788999888532899808998
Q gi|254780725|r   34 FCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVI  112 (427)
Q Consensus        34 f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivi  112 (427)
T Consensus         7 VEDd~~l~~~l~~~-----L~~~G~~V~~a~~g~~al~~l~~--~~DlvilDi~LP~~dG~~l~~~iR~~--~~~PII~l   77 (232)
T PRK10955          7 VDDDRELTSLLKEL-----LEMEGFNVIVAHDGEQALDLLDD--SIDLLLLDVMMPKKNGIDTLKALRQT--HQTPVIML   77 (232)
T ss_pred             EECCHHHHHHHHHH-----HHHCCCEEEEECCHHHHHHHHHC--CCCEEEEECCCCCCCCCCCCCEEECC--CCCCEEEE
T ss_conf             96989999999999-----98889999998999999999648--98999991899988867230124407--88878998


Q ss_pred             ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf             1687189999999765626431899989999976310233
Q gi|254780725|r  113 GDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP  152 (427)
Q Consensus       113 g~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~  152 (427)
T Consensus        78 ta~~~~~d~i~~l~~GADDYl~KPf~~~eL~ari~allrR  117 (232)
T PRK10955         78 TARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILRR  117 (232)
T ss_pred             ECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHHHCC
T ss_conf             0556768899999769757633899989999999999761