HHsearch alignment for GI: 254780725 and conserved domain: PRK11475

>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=98.59  E-value=7.1e-07  Score=61.46  Aligned_cols=93  Identities=19%  Similarity=0.185  Sum_probs=76.3

Q ss_pred             EEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEECC
Q ss_conf             2373069989999998618998499998059876778899988853289980899816871-899999997656264318
Q gi|254780725|r   57 NMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTND-VSLYRALISNHVSEYLIE  135 (427)
Q Consensus        57 ~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d-~~l~r~l~r~Gv~dyl~~  135 (427)
T Consensus        21 ~vv~e~~~g~EAl~~~~~~-~v~~~LmDi~mP~~dGL~~~~~L~r~~-P~vriLVLTm~d~e~~v~~aL~~aga~Gyl~K   98 (205)
T PRK11475         21 HIFSSQSSFQDAMSRISFS-AVIFSLSAMRSERREGLSCLTELAIKF-PRMRRLVIADDDIEARLIGSLSPSPLDGVLSK   98 (205)
T ss_pred             EEEECCCCHHHHHHCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHCCEEEEC
T ss_conf             9950545699998628866-643898538999976699999999978-99718999747687999999998416688856


Q ss_pred             CCCHHHHHHHHHHCCC
Q ss_conf             9998999997631023
Q gi|254780725|r  136 PLSVADIINSISAIFT  151 (427)
Q Consensus       136 P~~~~~l~~ai~~~~~  151 (427)
T Consensus        99 ~~~~~eL~~Ai~~~~~  114 (205)
T PRK11475         99 ASTLEILQQELFLSLN  114 (205)
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             7889999999999870