HHsearch alignment for GI: 254780725 and conserved domain: PRK11475
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional.
Probab=98.59 E-value=7.1e-07 Score=61.46 Aligned_cols=93 Identities=19% Similarity=0.185 Sum_probs=76.3
Q ss_pred EEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEECCCC-HHHHHHHHHCCCCEEECC
Q ss_conf 2373069989999998618998499998059876778899988853289980899816871-899999997656264318
Q gi|254780725|r 57 NMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTND-VSLYRALISNHVSEYLIE 135 (427)
Q Consensus 57 ~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig~~~d-~~l~r~l~r~Gv~dyl~~ 135 (427)
T Consensus 21 ~vv~e~~~g~EAl~~~~~~-~v~~~LmDi~mP~~dGL~~~~~L~r~~-P~vriLVLTm~d~e~~v~~aL~~aga~Gyl~K 98 (205)
T PRK11475 21 HIFSSQSSFQDAMSRISFS-AVIFSLSAMRSERREGLSCLTELAIKF-PRMRRLVIADDDIEARLIGSLSPSPLDGVLSK 98 (205)
T ss_pred EEEECCCCHHHHHHCCCCC-CCEEEEECCCCCCCCHHHHHHHHHHHC-CCCEEEEEECCCCHHHHHHHHHHHHCCEEEEC
T ss_conf 9950545699998628866-643898538999976699999999978-99718999747687999999998416688856
Q ss_pred CCCHHHHHHHHHHCCC
Q ss_conf 9998999997631023
Q gi|254780725|r 136 PLSVADIINSISAIFT 151 (427)
Q Consensus 136 P~~~~~l~~ai~~~~~ 151 (427)
T Consensus 99 ~~~~~eL~~Ai~~~~~ 114 (205)
T PRK11475 99 ASTLEILQQELFLSLN 114 (205)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 7889999999999870