HHsearch alignment for GI: 254780725 and conserved domain: PRK11889
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.97 E-value=8.8e-05 Score=48.56 Aligned_cols=169 Identities=14% Similarity=0.133 Sum_probs=90.1
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 67537999746988775689999999999626994999978798986033438998789888631845612433765320
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPV 238 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~ 238 (427)
T Consensus 239 ~~~q~IALVGP-TGVGKTTTIAKLAArf~~-~~KkVALITtDTYRIGAV------------EQLKTYA--------eIM- 295 (436)
T PRK11889 239 KEVQTIALIGP-TGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTV------------QQLQDYV--------KTI- 295 (436)
T ss_pred HHCEEEEEECC-CCCCHHHHHHHHHHHHHC-CCCEEEEEECCCCHHHHH------------HHHHHHH--------HHH-
T ss_conf 41717999899-998889999999999861-698089998066347699------------9999999--------984-
Q ss_pred CCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHH--CCCEEEECCCCCCC--HHH----HHHHHH--CCCCCCCCCCCH
Q ss_conf 24898068724876120320799999998999851--28889973888889--899----999862--012543578776
Q gi|254780725|r 239 FYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQ--IFPLVILDVPHVWN--SWT----QEVLTL--SDKVVITTSLDL 308 (427)
Q Consensus 239 ~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~--~yd~VIiD~p~~~~--~~~----~~~L~~--AD~vviV~~p~~ 308 (427)
T Consensus 296 ----gVPV~VV---------~dp~eL~~AL~~lkdka~~DLILIDTAGRS~RD~~~I~EL~~~l~~~~p~ev~LVLSATT 362 (436)
T PRK11889 296 ----GFEVIAV---------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM 362 (436)
T ss_pred ----CCCEEEE---------CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf ----9943996---------888999999998763368888999298988468999999999985127771699997889
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEE-----ECCCHHH
Q ss_conf 889999999999998198767538999565898752005999999848953799-----0687999
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAI-----IPFDGAV 369 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~-----IP~D~~~ 369 (427)
T Consensus 363 -K~~DL~eIi~rF~~l~i----dglIfTKLDET~Sl-G~ILNv~~~s~LPIsYvTdGQ~VPEDIev 422 (436)
T PRK11889 363 -KSKDMIEIITNFKDIHI----DGIVFTKFDETASS-GELLKIPAVSSAPIVLMTDGQDVKKNIHI 422 (436)
T ss_pred -CHHHHHHHHHHHCCCCC----CEEEEEECCCCCCC-HHHHHHHHHHCCCEEEECCCCCCCCCHHH
T ss_conf -98999999997257998----82899713256870-37888998839987997899858753000