HHsearch alignment for GI: 254780725 and conserved domain: PRK13232
>PRK13232 nifH nitrogenase reductase; Reviewed.
Probab=100.00 E-value=5.8e-35 Score=234.15 Aligned_cols=257 Identities=14% Similarity=0.140 Sum_probs=194.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
T Consensus 2 ~~iaiyG-KGGVGKSTTt~NLaAALA~-~GkkVL~IgcDPk~dsT~~l~gg~~~~tvld~l~~~~~-~~~~l~~v~~~g~ 78 (273)
T PRK13232 2 RQIAIYG-KGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGD-EGVDLDVVMQPGF 78 (273)
T ss_pred CEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCHHHHHHHCCCCCCCHHHHHHHCCC-CCCCHHHEEECCC
T ss_conf 5799979-9866588789999999997-79969998978844277788589988879999986185-6563666154288
Q ss_pred CCEEEEECCCCCCCH-----HCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHH---HHHHCCCCCCCCCCCHHHHHH
Q ss_conf 980687248761203-----207999999989998512888997388888989999---986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRT-----YDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQE---VLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~-----~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~---~L~~AD~vviV~~p~~~slr~ 313 (427)
T Consensus 79 ~gv~cve~ggp~~g~gcagrgii~~~~lle~l~~~~~~~Dyvl~Dvlgdvvcggfa~P~~~~~A~evlIVts~E~~slya 158 (273)
T PRK13232 79 GDIKCVESGGPEPGVGCAGRGIITSIGLLENLGAYTDDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYA 158 (273)
T ss_pred CCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHH
T ss_conf 97389868998767654530478888899970832147988999414733236531442016576899980760888999
Q ss_pred HHHHHHHHHHCCC-CCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHHH
Q ss_conf 9999999998198-767538999565898752005999999848953799068799999988479618988899989999
Q gi|254780725|r 314 SKNLIDVLKKLRP-ADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANL 392 (427)
Q Consensus 314 a~~ll~~l~~~~~-~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~~ 392 (427)
T Consensus 159 annI~k~i~~~~~~~~rl~GiI~n~r~~~~~-~e~v~~fa~~~g~~vi~~IPr~~~v-~~A~~~g~tvie~~P~S~~A~a 236 (273)
T PRK13232 159 ANNICKGLAKFAKGGARLGGIICNSRNVDGE-RELLEAFAKKLGSQLIHFVPRDNIV-QRAEINRKTVIDFDPESNQAKE 236 (273)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEECCCCCCH-HHHHHHHHHHCCCCEEEECCCCHHH-HHHHHCCCEEEEECCCCHHHHH
T ss_conf 9999999999962188501488505577638-9999999997199669978997788-7648729835897999979999
Q ss_pred HHHHHHHHHCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 9999999852212232111058999987423
Q gi|254780725|r 393 LVDFSRVLMGRVTVSKPQSAMYTKIKKIFNM 423 (427)
Q Consensus 393 ~~~La~~i~gr~~~~~~k~~~~~~l~~lf~r 423 (427)
T Consensus 237 Y~~LA~~I~~~~~~~~P~pl~~~el~~~~~~ 267 (273)
T PRK13232 237 YLTLAHNVQNNDKLVVPTPLPMEELEAMMVE 267 (273)
T ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 9999999985899877887998999999998