HHsearch alignment for GI: 254780725 and conserved domain: PRK13705
>PRK13705 plasmid-partitioning protein SopA; Provisional.
Probab=99.97 E-value=3.6e-29 Score=198.54 Aligned_cols=222 Identities=14% Similarity=0.133 Sum_probs=160.8
Q ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEE-CCCCCCCCHHHCCCCCCCC------HHHHHCCCCCHH
Q ss_conf 456753799974698877568999999999962699499997-8798986033438998789------888631845612
Q gi|254780725|r 157 KGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLAD-LDLPYGTANINFDKDPINS------ISDAIYPVGRID 229 (427)
Q Consensus 157 ~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvD-lDl~~g~~~~~l~~~~~~~------l~d~l~~~~rlD 229 (427)
T Consensus 102 ~g~~~~VIAVaNqKGGvGKTTTavnLA~~LAl-~G~RVLlID~LDPQ-anlT~~~G~~pd~~~~~~~tl~~~~~~-~~~~ 178 (388)
T PRK13705 102 EDEFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQ-GTASMYHGWVPDLHIHAEDTLLPFYLG-EKDD 178 (388)
T ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCC-CCCCCCCCCCCCCCCCCCCHHHHHHHC-CCCC
T ss_conf 99987289995278885599999999999997-79908999587888-656435688887665644302477614-6665
Q ss_pred HHHHHHHHH-CCCCCEEEEECCCCCCCHHC-C------------CHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHH
Q ss_conf 433765320-24898068724876120320-7------------999999989998512888997388888989999986
Q gi|254780725|r 230 KAFVSRLPV-FYAENLSILTAPAMLSRTYD-F------------DEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLT 295 (427)
Q Consensus 230 ~~~l~~~l~-~~~~gL~lL~a~~~~~~~~~-~------------~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~ 295 (427)
T Consensus 179 ---~~~~I~~T~~~gLDlIPs~l~L~~~E~el~~~~~~~~~~~~~~~~Lr~aL~~v~d~YD~IlIDcPPsLG~LTiNAL~ 255 (388)
T PRK13705 179 ---AAYAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVAHDYDVIVIDSAPNLGIGTINVVC 255 (388)
T ss_pred ---HHHEEECCCCCCEEEECCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHH
T ss_conf ---54504347889979970898999999999775531232225899999999862503999999589717799999999
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHH-------CCCCCCCCEEEEECCCCCCCCHHH--HHHHHHHHCCCEEEEECCC
Q ss_conf 2012543578776889999999999998-------198767538999565898752005--9999998489537990687
Q gi|254780725|r 296 LSDKVVITTSLDLAGLRNSKNLIDVLKK-------LRPADKPPYLVLNQVKTPKKPEIS--ISDFCAPLGITPSAIIPFD 366 (427)
Q Consensus 296 ~AD~vviV~~p~~~slr~a~~ll~~l~~-------~~~~~~~~~iVlNr~~~~~~~~i~--~~~~~~~lg~~~~~~IP~D 366 (427)
T Consensus 256 AAd~vlIPv~p~~lD~~S~~qFl~m~~~l~~~~~~~g~~-~~~r~L~Tr~e~~d~~q~~~m~~~lr~~fg~~vl~~~i~~ 334 (388)
T PRK13705 256 AADVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFE-PDVRILLTKYSNANGSQSPWMEEQIRDAWGSMVLKNVVRE 334 (388)
T ss_pred HHCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHH
T ss_conf 808548678940776999999999999999998751777-6348998725899987899999999999767776362257
Q ss_pred HHHHHHHHHCCCCEEEECC
Q ss_conf 9999998847961898889
Q gi|254780725|r 367 GAVFGMSANSGKMIHEVDP 385 (427)
Q Consensus 367 ~~~~~~A~~~G~pi~e~~p 385 (427)
T Consensus 335 S~aI~~A~~~~~TlyE~~~ 353 (388)
T PRK13705 335 TDEVGKGQIRMRTVFEQAI 353 (388)
T ss_pred HHHHHHHHHHCCCCEECCC
T ss_conf 8999872652073010244