HHsearch alignment for GI: 254780725 and conserved domain: PRK13886

>PRK13886 conjugal transfer protein TraL; Provisional.
Probab=98.73  E-value=2.9e-07  Score=63.86  Aligned_cols=143  Identities=17%  Similarity=0.086  Sum_probs=88.9

Q ss_pred             CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf             53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r  161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY  240 (427)
Q Consensus       161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~  240 (427)
T Consensus         2 a~IH~vlqgKGGVGKS~va~~LaQY~~~-~~~~~~~iDTDpvN~tf~~ykal~---------------------------   53 (241)
T PRK13886          2 AKIHMVLQGKGGVGKSMIAATIAQYKAG-KGQKPLCIDTDPVNATFEGYKALN---------------------------   53 (241)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCCCEEECCCCCCCHHHCCCCC---------------------------
T ss_conf             7599985588863099999999999983-599985560899970534214367---------------------------


Q ss_pred             CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHH--------HHHHHHCCCC---CCCCCCCH
Q ss_conf             89806872487612032079999999899985128889973888889-899--------9998620125---43578776
Q gi|254780725|r  241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWT--------QEVLTLSDKV---VITTSLDL  308 (427)
Q Consensus       241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~--------~~~L~~AD~v---viV~~p~~  308 (427)
T Consensus        54 v~~i~I~-------e~~~i~~r~FD~l~E~i~~~~~~~VID~GAstfvPL~~Yl~eN~v~~ll~e~G~~v~iH~vi~GG-  125 (241)
T PRK13886         54 VRRLNIM-------DGDEINTRNFDALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGG-  125 (241)
T ss_pred             CEEEEEE-------CCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEEECCC-
T ss_conf             5577752-------38865666668999998568998899885176778999998788699999779739999984598-


Q ss_pred             HHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf             8899999999999981987675389995658
Q gi|254780725|r  309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVK  339 (427)
Q Consensus       309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~  339 (427)
T Consensus       126 qa~~DT~~gl~~l~~~~~~~~~~VVWlN~~~  156 (241)
T PRK13886        126 QALLDTVSGFAQLASQFPAECLFVVWLNPYW  156 (241)
T ss_pred             CCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             4277899999999986587787899974887