HHsearch alignment for GI: 254780725 and conserved domain: PRK13886
>PRK13886 conjugal transfer protein TraL; Provisional.
Probab=98.73 E-value=2.9e-07 Score=63.86 Aligned_cols=143 Identities=17% Similarity=0.086 Sum_probs=88.9
Q ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCC
Q ss_conf 53799974698877568999999999962699499997879898603343899878988863184561243376532024
Q gi|254780725|r 161 GCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 (427)
Q Consensus 161 grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~ 240 (427)
T Consensus 2 a~IH~vlqgKGGVGKS~va~~LaQY~~~-~~~~~~~iDTDpvN~tf~~ykal~--------------------------- 53 (241)
T PRK13886 2 AKIHMVLQGKGGVGKSMIAATIAQYKAG-KGQKPLCIDTDPVNATFEGYKALN--------------------------- 53 (241)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHH-CCCCCCEEECCCCCCCHHHCCCCC---------------------------
T ss_conf 7599985588863099999999999983-599985560899970534214367---------------------------
Q ss_pred CCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCC-HHH--------HHHHHHCCCC---CCCCCCCH
Q ss_conf 89806872487612032079999999899985128889973888889-899--------9998620125---43578776
Q gi|254780725|r 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWN-SWT--------QEVLTLSDKV---VITTSLDL 308 (427)
Q Consensus 241 ~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~-~~~--------~~~L~~AD~v---viV~~p~~ 308 (427)
T Consensus 54 v~~i~I~-------e~~~i~~r~FD~l~E~i~~~~~~~VID~GAstfvPL~~Yl~eN~v~~ll~e~G~~v~iH~vi~GG- 125 (241)
T PRK13886 54 VRRLNIM-------DGDEINTRNFDALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPALLQDMGHELVVHTVVTGG- 125 (241)
T ss_pred CEEEEEE-------CCCCCCHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHCCHHHHHHHCCCEEEEEEEECCC-
T ss_conf 5577752-------38865666668999998568998899885176778999998788699999779739999984598-
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 8899999999999981987675389995658
Q gi|254780725|r 309 AGLRNSKNLIDVLKKLRPADKPPYLVLNQVK 339 (427)
Q Consensus 309 ~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~ 339 (427)
T Consensus 126 qa~~DT~~gl~~l~~~~~~~~~~VVWlN~~~ 156 (241)
T PRK13886 126 QALLDTVSGFAQLASQFPAECLFVVWLNPYW 156 (241)
T ss_pred CCHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf 4277899999999986587787899974887