HHsearch alignment for GI: 254780725 and conserved domain: TIGR01818
>TIGR01818 ntrC nitrogen regulation protein NR(I); InterPro: IPR010114 This entry represents Nitrogen regulatory protein C (NtrC), which is a bacterial enhancer-binding protein that activates the transcription of genes encoding enzymes required for nitrogen metabolism. It is phosphorylated by NtrB and interacts with sigma-54. One of the best studied examples is its activation of the gene glnA, which encodes the enzyme glutamine synthetase.. NtrC is composed of three domains , . The 124 residue N-terminal domain is homologous to receiver domains of other response regulator proteins in two-component signal transduction systems , . The 240 residue central domain of NtrC is homologous to a domain found in all activators of the sigma-54 RNA polymerase holoenzyme , . The C-terminal domain has been indicated to contain the determinants necessary for both DNA-binding and dimerization of full-length NtrC.; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0009399 nitrogen fixation, 0050906 detection of stimulus during sensory perception.
Probab=99.68 E-value=2.4e-15 Score=113.55 Aligned_cols=156 Identities=16% Similarity=0.233 Sum_probs=123.9
Q ss_pred ECCHHHHHHHHHHHHHHHHHHCEEEEEC-CCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCCEEEEEE
Q ss_conf 3898999999988641100202237306-998999999861899849999805987677889998885328998089981
Q gi|254780725|r 35 CVTDTLYSVVERSKIDPRMSQVNMRITR-GSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIG 113 (427)
Q Consensus 35 ~~~~~~~~~~~~~~~drr~~~~~~~v~~-g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p~~~Vivig 113 (427)
T Consensus 5 DDD~siR~VL~~A-----L~~~g~~v~~f~~A~~~l~~l~~~p~pD~~~tD~rMPg~~Gl~LL~~ik~~-~P~LPVIvM~ 78 (471)
T TIGR01818 5 DDDRSIRWVLEKA-----LSRAGIEVRTFDNAASVLRALAREPQPDLLITDVRMPGEDGLDLLKQIKKR-HPKLPVIVMT 78 (471)
T ss_pred ECCCHHHHHHHHH-----HHHCCCEEEEHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHHHHHHC-CCCCCEEEEC
T ss_conf 6471899999999-----966695453113189999998447999879861226882489999999850-8999779871
Q ss_pred CCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCCCCCCC-------------------C------------CCCE
Q ss_conf 68718999999976562643189998999997631023322234-------------------5------------6753
Q gi|254780725|r 114 DTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGK-------------------G------------SSGC 162 (427)
Q Consensus 114 ~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~~~~~~-------------------~------------~~gr 162 (427)
T Consensus 79 A~~dl~~Av~a~~~GAfEYLpKPFD~de~v~lv~RA~~~~~~~~~~~~~~~~~~~~~~liG~aPAMQevfR~igRL~~~~ 158 (471)
T TIGR01818 79 AHSDLDSAVAAYQRGAFEYLPKPFDLDEAVTLVERALAHAQEQVALELDAGEAEDSAELIGEAPAMQEVFRAIGRLSRSD 158 (471)
T ss_pred CCHHHHHHHHHHHCCCHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 30678999999735830217698766889999998610300122200012101256212368851689999999751696
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEE
Q ss_conf 79997469887756899999999996269949999
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLA 197 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLv 197 (427)
T Consensus 159 l~VlI~GESGTGKELVA~ALH~-~s~R~~~PFiAl 192 (471)
T TIGR01818 159 LSVLINGESGTGKELVARALHR-HSPRARGPFIAL 192 (471)
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CCCCCCCCCEEE
T ss_conf 0588855757758999998401-375557773273