HHsearch alignment for GI: 254780725 and conserved domain: TIGR02173
>TIGR02173 cyt_kin_arch cytidylate kinase, putative; InterPro: IPR011892 Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by IPR003136 from INTERPRO.; GO: 0004127 cytidylate kinase activity, 0005524 ATP binding, 0006139 nucleobase nucleoside nucleotide and nucleic acid metabolic process.
Probab=91.38 E-value=0.15 Score=28.77 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=56.1
Q ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCCC
Q ss_conf 99974698877568999999999962699499997879898603343899878988863184561243376532024898
Q gi|254780725|r 164 ISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAEN 243 (427)
Q Consensus 164 Iav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~g 243 (427)
T Consensus 2 ~I~ISGpPGSGktTvA~~lA~~Ls----l~~------iSaG~i------------RelA~~-----------------~G 42 (173)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLS----LKL------ISAGDI------------RELAEK-----------------MG 42 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCC----CCE------ECCCHH------------HHHHHH-----------------CC
T ss_conf 788735896864789999998639----831------202007------------889864-----------------29
Q ss_pred EEEEECCCCCCCHHCCCHHHHHH-HHHHHHHCCCEEEECCCCCCCHHHHH-HHHHCCCCCC-CCCCCHHHHHHHH
Q ss_conf 06872487612032079999999-89998512888997388888989999-9862012543-5787768899999
Q gi|254780725|r 244 LSILTAPAMLSRTYDFDEKMIVP-VLDILEQIFPLVILDVPHVWNSWTQE-VLTLSDKVVI-TTSLDLAGLRNSK 315 (427)
Q Consensus 244 L~lL~a~~~~~~~~~~~~~~l~~-ll~~l~~~yd~VIiD~p~~~~~~~~~-~L~~AD~vvi-V~~p~~~slr~a~ 315 (427)
T Consensus 43 ldl~E~~~-aee~~eIDk~-iD~~~~E~A~~~~nvvlE---srlagW~~~~nG~yaD~~iyL~A~levRA~RIA~ 112 (173)
T TIGR02173 43 LDLAESKY-AEENPEIDKK-IDRRIREIAEKEKNVVLE---SRLAGWILKKNGEYADVKIYLKAPLEVRARRIAK 112 (173)
T ss_pred CCHHHHHH-HCCCCCCCHH-HHHHHHHHHCCCCCEEEE---EHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHH
T ss_conf 88777344-3058631167-537885543048966885---2054331157889675678860883332433211