HHsearch alignment for GI: 254780725 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=97.28 E-value=0.0015 Score=40.97 Aligned_cols=146 Identities=16% Similarity=0.121 Sum_probs=78.2
Q ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHH-
Q ss_conf 6753799974698877568999999999962699499997879898603343899878988863184561243376532-
Q gi|254780725|r 159 SSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLP- 237 (427)
Q Consensus 159 ~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l- 237 (427)
T Consensus 10 E~G~iTQiYG-p~G~GKTn~c~~~a~~a~~-~Gk~v~YiDTEGGL--------------------S~ER~~q~~~~~~~D 67 (223)
T TIGR02237 10 ERGIITQIYG-PPGSGKTNICLILAVNAAR-QGKKVVYIDTEGGL--------------------SPERFKQIAEDRALD 67 (223)
T ss_pred CCCEEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCCEEEEECCCCC--------------------HHHHHHHHHHCCCCC
T ss_conf 2035889875-8998678999999999986-18958999628983--------------------289999986305889
Q ss_pred -HCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC---CCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf -0248980687248761203207999999989998512---888997388888989999986201254357877688999
Q gi|254780725|r 238 -VFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI---FPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 238 -~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~---yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~ 313 (427)
T Consensus 68 ~e~~~~~~iv~~~-~~f----~eQ~~ai~~~~~~~~~~G~~~~LvVvDs~t---~~YRle~~~d~nk------~~~~~~~ 133 (223)
T TIGR02237 68 PERVLSNVIVFEV-FDF----DEQEVAIQKTSKLIDRDGDKADLVVVDSFT---ALYRLERSDDRNK------QISLNRE 133 (223)
T ss_pred HHHHHCCEEEECC-CCH----HHHHHHHHHHHHHHHCCCCEEEEEEEECCH---HHHHHCCCCCCHH------HHHHHHH
T ss_conf 8888415355235-356----789999999999986068833148881533---4542025786025------6799999
Q ss_pred HHHHHHHHHHCCCCCCCCEEEEECCCC
Q ss_conf 999999999819876753899956589
Q gi|254780725|r 314 SKNLIDVLKKLRPADKPPYLVLNQVKT 340 (427)
Q Consensus 314 a~~ll~~l~~~~~~~~~~~iVlNr~~~ 340 (427)
T Consensus 134 l~~Ql~~Ll~lArk~~~AVviTNQvy~ 160 (223)
T TIGR02237 134 LARQLTLLLSLARKKDLAVVITNQVYT 160 (223)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEEEEE
T ss_conf 999999999998764997899711588