HHsearch alignment for GI: 254780725 and conserved domain: TIGR02397
>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=92.26 E-value=0.21 Score=27.86 Aligned_cols=159 Identities=16% Similarity=0.206 Sum_probs=89.3
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC--CCC----
Q ss_conf 99999763102332223456753799974698877568999999999962699499997879898603343--899----
Q gi|254780725|r 140 ADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINF--DKD---- 213 (427)
Q Consensus 140 ~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l--~~~---- 213 (427)
T Consensus 20 ~~iv~tL~NAi~-----~~ri~HAYLF~GpR-GtGKTS~ARIfAKaLNC~-~-----~~~~PC-n~C~~C~~i~~g~~~D 86 (363)
T TIGR02397 20 EHIVKTLKNAIK-----NGRIAHAYLFSGPR-GTGKTSIARIFAKALNCQ-G-----PDGEPC-NECESCKEINSGSSLD 86 (363)
T ss_pred HHHHHHHHHHHH-----HCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCC-C-----CCCCCC-CCCCHHHHHHCCCCCC
T ss_conf 799999999997-----18966234502859-976355899999986588-7-----877877-7750227765289866
Q ss_pred -------CCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCC-----CCCHHCCCHHHHHHHHHHHHHCCCEEEE-
Q ss_conf -------878988863184561243376532024898068724876-----1203207999999989998512888997-
Q gi|254780725|r 214 -------PINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAM-----LSRTYDFDEKMIVPVLDILEQIFPLVIL- 280 (427)
Q Consensus 214 -------~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~-----~~~~~~~~~~~l~~ll~~l~~~yd~VIi- 280 (427)
T Consensus 87 viEiDAASN~gVD~IR--------~l~--------e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FI 150 (363)
T TIGR02397 87 VIEIDAASNNGVDDIR--------ELR--------ENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI 150 (363)
T ss_pred EEEECCCCCCCHHHHH--------HHH--------HHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf 6886486568788999--------998--------730368755443358873230286568999876522798762888
Q ss_pred --------------------CCCCCCCHHHHHHHH---------H-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf --------------------388888989999986---------2-0125435787768899999999999981987
Q gi|254780725|r 281 --------------------DVPHVWNSWTQEVLT---------L-SDKVVITTSLDLAGLRNSKNLIDVLKKLRPA 327 (427)
Q Consensus 281 --------------------D~p~~~~~~~~~~L~---------~-AD~vviV~~p~~~slr~a~~ll~~l~~~~~~ 327 (427)
T Consensus 151 lATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~ 227 (363)
T TIGR02397 151 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNG 227 (363)
T ss_pred EECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf 73487112055402100031267899899999999999870883177899999996289610688999999982688