HHsearch alignment for GI: 254780725 and conserved domain: TIGR02397

>TIGR02397 dnaX_nterm DNA polymerase III, subunits gamma and tau; InterPro: IPR012763 This entry represents the well-conserved first N-terminal domain of DnaX, approx. 365 aa. The full-length product of the dnaX gene in Escherichia coli encodes the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the extreme thermophile Thermus thermophilis.; GO: 0003887 DNA-directed DNA polymerase activity, 0005524 ATP binding, 0006260 DNA replication, 0009360 DNA polymerase III complex.
Probab=92.26  E-value=0.21  Score=27.86  Aligned_cols=159  Identities=16%  Similarity=0.206  Sum_probs=89.3

Q ss_pred             HHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC--CCC----
Q ss_conf             99999763102332223456753799974698877568999999999962699499997879898603343--899----
Q gi|254780725|r  140 ADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINF--DKD----  213 (427)
Q Consensus       140 ~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l--~~~----  213 (427)
T Consensus        20 ~~iv~tL~NAi~-----~~ri~HAYLF~GpR-GtGKTS~ARIfAKaLNC~-~-----~~~~PC-n~C~~C~~i~~g~~~D   86 (363)
T TIGR02397        20 EHIVKTLKNAIK-----NGRIAHAYLFSGPR-GTGKTSIARIFAKALNCQ-G-----PDGEPC-NECESCKEINSGSSLD   86 (363)
T ss_pred             HHHHHHHHHHHH-----HCCCCCEEEECCCC-CCCHHHHHHHHHHHHCCC-C-----CCCCCC-CCCCHHHHHHCCCCCC
T ss_conf             799999999997-----18966234502859-976355899999986588-7-----877877-7750227765289866


Q ss_pred             -------CCCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCC-----CCCHHCCCHHHHHHHHHHHHHCCCEEEE-
Q ss_conf             -------878988863184561243376532024898068724876-----1203207999999989998512888997-
Q gi|254780725|r  214 -------PINSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAM-----LSRTYDFDEKMIVPVLDILEQIFPLVIL-  280 (427)
Q Consensus       214 -------~~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~-----~~~~~~~~~~~l~~ll~~l~~~yd~VIi-  280 (427)
T Consensus        87 viEiDAASN~gVD~IR--------~l~--------e~v~y~P~~~kYKvYIIDEVHMLS~~AFNALLKTLEEPP~hV~FI  150 (363)
T TIGR02397        87 VIEIDAASNNGVDDIR--------ELR--------ENVKYAPSKGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFI  150 (363)
T ss_pred             EEEECCCCCCCHHHHH--------HHH--------HHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCEEEE
T ss_conf             6886486568788999--------998--------730368755443358873230286568999876522798762888


Q ss_pred             --------------------CCCCCCCHHHHHHHH---------H-CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf             --------------------388888989999986---------2-0125435787768899999999999981987
Q gi|254780725|r  281 --------------------DVPHVWNSWTQEVLT---------L-SDKVVITTSLDLAGLRNSKNLIDVLKKLRPA  327 (427)
Q Consensus       281 --------------------D~p~~~~~~~~~~L~---------~-AD~vviV~~p~~~slr~a~~ll~~l~~~~~~  327 (427)
T Consensus       151 lATTE~~KiP~TIlSRCQrF~Fk~i~~~~i~~~L~~I~~~E~I~~e~~AL~~IA~~a~GS~RDAlsllDQ~~~~~~~  227 (363)
T TIGR02397       151 LATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSMRDALSLLDQAISFGNG  227 (363)
T ss_pred             EECCCHHHCCCCCEEECEEECCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCC
T ss_conf             73487112055402100031267899899999999999870883177899999996289610688999999982688