HHsearch alignment for GI: 254780725 and conserved domain: TIGR02875
>TIGR02875 spore_0_A sporulation transcription factor Spo0A; InterPro: IPR012052 Members of this group are response regulators/transcription factors that contain CheY-like receiver (phosphoacceptor) domain and a unique DNA-binding domain. Spo0A controls the entry of Bacillus subtilis into the developmental process of sporulation . Activation of the Spo0A transcription factor by phosphorylation serves as a developmental checkpoint and to integrate several physiological signals that control entry into the sporulation pathway. The signals are generated by conditions of nutrient deprivation, high cell density, the Krebs cycle, DNA replication, DNA damage, and some aspect of the chromosome partitioning machinery . Activated Spo0A has multiple functions . It represses promoters (such as the abrB promoter) by binding to sites (0A boxes) downstream from the transcription start site. Spo0A also activates transcription from promoters used by two forms of RNA polymerase that differ by containing either the major sigma factor, sigma A (e.g. the spoIIE and spoIIG promoters) or the alternate sigma factor, sigma H (e.g. the spoIIA promoter). At promoters activated by Spo0A, the 0A boxes lie upstream of the transcription-initiation site.; GO: 0003677 DNA binding, 0005509 calcium ion binding, 0000160 two-component signal transduction system (phosphorelay), 0042173 regulation of sporulation, 0045449 regulation of transcription, 0050906 detection of stimulus during sensory perception.
Probab=98.88 E-value=9.8e-08 Score=66.72 Aligned_cols=121 Identities=11% Similarity=0.200 Sum_probs=95.1
Q ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC-CC
Q ss_conf 05999838989999999886411002022373069989999998618998499998059876778899988853289-98
Q gi|254780725|r 29 ISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS-GT 107 (427)
Q Consensus 29 ~~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p-~~ 107 (427)
T Consensus 3 Iri~i~DDNkEFc~lL~eY~~~--Q~D~EVvG~A~nG~~a~~~I~~q~-PD~vvLDIIMPhLDGiGVLEKl~~~~~~~~P 79 (270)
T TIGR02875 3 IRIVIADDNKEFCNLLKEYLAA--QEDMEVVGVAHNGVDALELIKEQK-PDVVVLDIIMPHLDGIGVLEKLNEIELKARP 79 (270)
T ss_pred EEEEEEECCHHHHHHHHHHHHC--CCCEEEEEECCCHHHHHHHHHHCC-CCEEEECCCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 2899982888999999999852--898389974147689999996089-9899951504300057999998898874489
Q ss_pred EEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCCCC
Q ss_conf 089981687189999999765626431899989999976310233
Q gi|254780725|r 108 KVIVIGDTNDVSLYRALISNHVSEYLIEPLSVADIINSISAIFTP 152 (427)
Q Consensus 108 ~Vivig~~~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~~~ 152 (427)
T Consensus 80 ~vi~LsAfGQE~ITqrA~~LGADYYvlKPfDle~L~~RIRQl~~~ 124 (270)
T TIGR02875 80 RVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLAEG 124 (270)
T ss_pred CEEEEECCCHHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHCC
T ss_conf 588852237558999999728981566504178899999986246