HHsearch alignment for GI: 254780725 and conserved domain: TIGR02928
>TIGR02928 TIGR02928 orc1/cdc6 family replication initiation protein; InterPro: IPR014277 This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. The proteins in this entry are found exclusively in the archaea. Several members may be found in a genome and interact with each other..
Probab=93.07 E-value=0.64 Score=24.82 Aligned_cols=186 Identities=12% Similarity=0.121 Sum_probs=82.5
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHH---CCCC-EEEEECCCCCCCCHHHCCCCC
Q ss_conf 899999763102332223456753799974698877568999999999962---6994-999978798986033438998
Q gi|254780725|r 139 VADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAHNCAFSIASV---FAME-TLLADLDLPYGTANINFDKDP 214 (427)
Q Consensus 139 ~~~l~~ai~~~~~~~~~~~~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~---~~~~-VlLvDlDl~~g~~~~~l~~~~ 214 (427)
T Consensus 26 I~~l~~~L~~~l~---PG~~P--~Ni~iYG-kTGtGKT~vt~~v~~~l~~~~~~~d~~D~~~~~~NC~~~~T~y~----- 94 (383)
T TIGR02928 26 IEELAKALRPILR---PGSRP--SNIFIYG-KTGTGKTAVTKYVMKELEEAAEDRDVRDVSTVYINCQILDTSYQ----- 94 (383)
T ss_pred HHHHHHHHHHHHC---CCCCC--CCEEEEC-CCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHH-----
T ss_conf 9999999887506---74898--7258878-88987889999999999998622699715899977854684699-----
Q ss_pred CCCHHHHHCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-HCCCEEEECCCCCCCHHHHHH
Q ss_conf 7898886318456124337653202489806872487612032079999999899985-128889973888889899999
Q gi|254780725|r 215 INSISDAIYPVGRIDKAFVSRLPVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILE-QIFPLVILDVPHVWNSWTQEV 293 (427)
Q Consensus 215 ~~~l~d~l~~~~rlD~~~l~~~l~~~~~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-~~yd~VIiD~p~~~~~~~~~~ 293 (427)
T Consensus 95 --~~~~L~-----------~~ln-~~~~~~~vP~t-------G~s~~~~~~~l~~~l~~~~~~~~~i------------v 141 (383)
T TIGR02928 95 --VLVELA-----------NQLN-RRGSGEEVPTT-------GLSTSEVFRELYKELNRERGDSLII------------V 141 (383)
T ss_pred --HHHHHH-----------HHHC-CCCCCCCCCCC-------CCCHHHHHHHHHHHHHHHCCCEEEE------------E
T ss_conf --999999-----------9851-57788889887-------7878999999999983201887999------------8
Q ss_pred HHHCCCCCCCCCCCHHHHH-HHHHHHHHHHHCCCCCCCCEEE--EECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHH
Q ss_conf 8620125435787768899-9999999999819876753899--956589875200599999984895379906879999
Q gi|254780725|r 294 LTLSDKVVITTSLDLAGLR-NSKNLIDVLKKLRPADKPPYLV--LNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVF 370 (427)
Q Consensus 294 L~~AD~vviV~~p~~~slr-~a~~ll~~l~~~~~~~~~~~iV--lNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~ 370 (427)
T Consensus 142 LDEiD~Lv-~~~~d~PAyS~~LY~L~Ra~~~~~~~~~~vgvIgISND~~f--~~~Ld-~RVkSsL~~eei~FpPYdA~eL 217 (383)
T TIGR02928 142 LDEIDKLV-RKDDDDPAYSKLLYQLSRARENGDLENAKVGVIGISNDLKF--RENLD-PRVKSSLCEEEIVFPPYDAEEL 217 (383)
T ss_pred ECCCCHHH-CCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCHH--HHHCC-CCEECCCCCCCCEECCCCHHHH
T ss_conf 62310221-58888807878853433100035778853489998657143--64457-5301324874004079886999
Q ss_pred HH
Q ss_conf 99
Q gi|254780725|r 371 GM 372 (427)
Q Consensus 371 ~~ 372 (427)
T Consensus 218 ~~ 219 (383)
T TIGR02928 218 RD 219 (383)
T ss_pred HH
T ss_conf 99