HHsearch alignment for GI: 254780725 and conserved domain: TIGR02956

>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=97.65  E-value=0.00078  Score=42.74  Aligned_cols=113  Identities=17%  Similarity=0.352  Sum_probs=89.5

Q ss_pred             EEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC-C-
Q ss_conf             5999838989999999886411002022373-069989999998618998499998059876778899988853289-9-
Q gi|254780725|r   30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS-G-  106 (427)
Q Consensus        30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p-~-  106 (427)
T Consensus       763 ~vL-lVEDN~vN~~VA~gf----L~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~  837 (1052)
T TIGR02956       763 RVL-LVEDNEVNQMVAQGF----LERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKND  837 (1052)
T ss_pred             EEE-EEECCHHHHHHHHHH----HHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf             132-464474779999999----842794472085499999998548876754551578898656789999999973204


Q ss_pred             -----CEEEEEECC---CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf             -----808998168---71899999997656264318999899999763102
Q gi|254780725|r  107 -----TKVIVIGDT---NDVSLYRALISNHVSEYLIEPLSVADIINSISAIF  150 (427)
Q Consensus       107 -----~~Vivig~~---~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~  150 (427)
T Consensus       838 ~~~~p~k~iAvSAHVf~Edv~~y~---~aGF~G~laKPl~~~~L~~~l~~~l  886 (1052)
T TIGR02956       838 SQDEPVKFIAVSAHVFNEDVAQYL---AAGFDGFLAKPLVEEQLVAMLAKIL  886 (1052)
T ss_pred             CCCCCCCEEEEEHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             445677722211334477699997---5302663479987788999999987