HHsearch alignment for GI: 254780725 and conserved domain: TIGR02956
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS; InterPro: IPR014302 This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (IPR003594 from INTERPRO), HAMP (IPR003660 from INTERPRO), phosphoacceptor (IPR003661 from INTERPRO), and phosphotransfer (IPR008207 from INTERPRO) domains and a response regulator receiver domain (IPR001789 from INTERPRO)..
Probab=97.65 E-value=0.00078 Score=42.74 Aligned_cols=113 Identities=17% Similarity=0.352 Sum_probs=89.5
Q ss_pred EEEEEECCHHHHHHHHHHHHHHHHHHCEEEE-ECCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCC-C-
Q ss_conf 5999838989999999886411002022373-069989999998618998499998059876778899988853289-9-
Q gi|254780725|r 30 SVHVFCVTDTLYSVVERSKIDPRMSQVNMRI-TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDS-G- 106 (427)
Q Consensus 30 ~~~~f~~~~~~~~~~~~~~~drr~~~~~~~v-~~g~~~~A~~~~~~~~~P~~iivd~~~~~~~~~~~l~~la~~~~p-~- 106 (427)
T Consensus 763 ~vL-lVEDN~vN~~VA~gf----L~~LGH~VtlA~s~~~A~~c~~~~~~FD~aLLDI~LPD~dGVtL~~~L~~~~~~k~~ 837 (1052)
T TIGR02956 763 RVL-LVEDNEVNQMVAQGF----LERLGHKVTLAESGQSALRCFHQDHRFDLALLDINLPDGDGVTLLQQLRAIYKAKND 837 (1052)
T ss_pred EEE-EEECCHHHHHHHHHH----HHCCCCEEEHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 132-464474779999999----842794472085499999998548876754551578898656789999999973204
Q ss_pred -----CEEEEEECC---CCHHHHHHHHHCCCCEEECCCCCHHHHHHHHHHCC
Q ss_conf -----808998168---71899999997656264318999899999763102
Q gi|254780725|r 107 -----TKVIVIGDT---NDVSLYRALISNHVSEYLIEPLSVADIINSISAIF 150 (427)
Q Consensus 107 -----~~Vivig~~---~d~~l~r~l~r~Gv~dyl~~P~~~~~l~~ai~~~~ 150 (427)
T Consensus 838 ~~~~p~k~iAvSAHVf~Edv~~y~---~aGF~G~laKPl~~~~L~~~l~~~l 886 (1052)
T TIGR02956 838 SQDEPVKFIAVSAHVFNEDVAQYL---AAGFDGFLAKPLVEEQLVAMLAKIL 886 (1052)
T ss_pred CCCCCCCEEEEEHHHHHHHHHHHH---HHHCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 445677722211334477699997---5302663479987788999999987