HHsearch alignment for GI: 254780725 and conserved domain: TIGR03600
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.27 E-value=0.0009 Score=42.37 Aligned_cols=111 Identities=18% Similarity=0.204 Sum_probs=59.4
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHC-CCCCCCCHHHHHCCCCCHHHHHHHHHH---H
Q ss_conf 799974698877568999999999962699499997879898603343-899878988863184561243376532---0
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINF-DKDPINSISDAIYPVGRIDKAFVSRLP---V 238 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l-~~~~~~~l~d~l~~~~rlD~~~l~~~l---~ 238 (427)
T Consensus 195 ~LiIiaARPsmGKTafalnia~n~A~~~g~~Vl~fSLEMs~eql~~R~la~~s~i~~~~i-~~g-~l~~~~~~~~~~a~~ 272 (421)
T TIGR03600 195 DLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSAEQLGERLLASKSGINTGNI-RTG-RFNDSDFNRLLNAVD 272 (421)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCCCHHHH-HCC-CCCHHHHHHHHHHHH
T ss_conf 689998546787459999999999986698389992579999999999998548977666-528-999899999999999
Q ss_pred CCC-CCEEEEECCCCCCCHHCCCHHHHHHHHHHHHHC---CCEEEECC
Q ss_conf 248-980687248761203207999999989998512---88899738
Q gi|254780725|r 239 FYA-ENLSILTAPAMLSRTYDFDEKMIVPVLDILEQI---FPLVILDV 282 (427)
Q Consensus 239 ~~~-~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~---yd~VIiD~ 282 (427)
T Consensus 273 ~l~~~~l~i-------~d~~~~ti~~ir~~~r~~~~~~~~l~livIDY 313 (421)
T TIGR03600 273 RLSEKDLYI-------DDTGGLTVAQIRSIARRIKRKKGGLDLIVVDY 313 (421)
T ss_pred HHHCCCEEE-------ECCCCCCHHHHHHHHHHHHHHCCCCCEEEECH
T ss_conf 861687899-------66998876789999999998628986999757