HHsearch alignment for GI: 254780725 and conserved domain: cd00550
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.87 E-value=4.5e-21 Score=148.76 Aligned_cols=198 Identities=18% Similarity=0.227 Sum_probs=113.2
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHH--HH---HCCCCCHHHH-HHHH
Q ss_conf 3799974698877568999999999962699499997879898603343899878988--86---3184561243-3765
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSIS--DA---IYPVGRIDKA-FVSR 235 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~--d~---l~~~~rlD~~-~l~~ 235 (427)
T Consensus 1 r~i-~~~GKGGVGKTT~AaalA~~lA~-~G~kVLlvstDPa-hsLsd~f~~~~~~~~~~v~~~~nL~a~-eid~~~~~~~ 76 (254)
T cd00550 1 RYI-FFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAM-EIDPQEALEE 76 (254)
T ss_pred CEE-EEECCCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCC-CCHHHHHCCCCCCCCCEECCCCCCEEE-EECHHHHHHH
T ss_conf 989-99689855489999999999996-8994999958986-448898488667887110366884578-7288999999
Q ss_pred HHHCCCCCEEEEECCCCCCCH-------HCC-CHHHHHHHHHHHH-HCCCEEEECCCCCC-----------CHHHHHHHH
Q ss_conf 320248980687248761203-------207-9999999899985-12888997388888-----------989999986
Q gi|254780725|r 236 LPVFYAENLSILTAPAMLSRT-------YDF-DEKMIVPVLDILE-QIFPLVILDVPHVW-----------NSWTQEVLT 295 (427)
Q Consensus 236 ~l~~~~~gL~lL~a~~~~~~~-------~~~-~~~~l~~ll~~l~-~~yd~VIiD~p~~~-----------~~~~~~~L~ 295 (427)
T Consensus 77 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~PG~~E~~~l~~i~~~~~~~~yD~IViDtaPTGhtLrlL~lP~~l~~~~~~L~ 156 (254)
T cd00550 77 YRQEVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILS 156 (254)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHCHHHHHHHHHHCC
T ss_conf 99999998863225566888899986398589999999999997606998899889985679987515699999998537
Q ss_pred H--CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCH------------HHHHHHHHHHCCCEEE
Q ss_conf 2--0125435787768899999999999981987675389995658987520------------0599999984895379
Q gi|254780725|r 296 L--SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPE------------ISISDFCAPLGITPSA 361 (427)
Q Consensus 296 ~--AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~------------i~~~~~~~~lg~~~~~ 361 (427)
T Consensus 157 d~~~t~~~lV~~PE~~~v~Et~R~~~~L~~~~i~v--~~vvvN~v~p~~~~~~~~~~~r~~~q~~~l~~i~~~f~~~~v~ 234 (254)
T cd00550 157 DPERTSFRLVCIPEKMSLYETERAIQELAKYGIDV--DAVIVNQLLPEDVTNCPFLEARREIQQKYLEEIEELFSDLPVA 234 (254)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCC--CEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEE
T ss_conf 95655899997787216999999999999779998--9799958808776889999999999999999999870589679
Q ss_pred EECC
Q ss_conf 9068
Q gi|254780725|r 362 IIPF 365 (427)
Q Consensus 362 ~IP~ 365 (427)
T Consensus 235 ~vp~ 238 (254)
T cd00550 235 KLPL 238 (254)
T ss_pred EECC
T ss_conf 8157