HHsearch alignment for GI: 254780725 and conserved domain: cd01123
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=96.32 E-value=0.081 Score=30.36 Aligned_cols=46 Identities=15% Similarity=0.266 Sum_probs=33.7
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHH-----HCCCCEEEEECCCCCC
Q ss_conf 5675379997469887756899999999996-----2699499997879898
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIAS-----VFAMETLLADLDLPYG 204 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~-----~~~~~VlLvDlDl~~g 204 (427)
T Consensus 16 i~~G~itEi~G-~~GsGKTql~lqla~~~~~~~~~~g~~~~vvyIdtE~~f~ 66 (235)
T cd01123 16 IETGSITEIFG-EFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFR 66 (235)
T ss_pred CCCCEEEEEEC-CCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 64787999999-9998499999999999842475367896299995367758