HHsearch alignment for GI: 254780725 and conserved domain: cd01887
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=94.07 E-value=0.22 Score=27.72 Aligned_cols=66 Identities=18% Similarity=0.244 Sum_probs=46.1
Q ss_pred CCCEEEECCCCCCCH--HHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 288899738888898--999998620125435787768899999999999981987675389995658987
Q gi|254780725|r 274 IFPLVILDVPHVWNS--WTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 274 ~yd~VIiD~p~~~~~--~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
T Consensus 49 ~~~i~~iDTPGh~~f~~~~~~~~~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~---~p~ivviNKiD~~~ 116 (168)
T cd01887 49 IPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAAN---VPFIVALNKIDKPN 116 (168)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCC---CCEEEEEECCCCCC
T ss_conf 871899989981677999999986268899998646675458999999998769---97899998930898