HHsearch alignment for GI: 254780725 and conserved domain: cd01983
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.44 E-value=1.4e-12 Score=96.57 Aligned_cols=95 Identities=27% Similarity=0.347 Sum_probs=78.1
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
T Consensus 1 ~i~~~~~k-GvGKTT~a~~La~~la~-~g~~Vl~vD-------------------------------------------- 34 (99)
T cd01983 1 VIVVTGKG-GVGKTTLAANLAAALAK-RGKRVLLID-------------------------------------------- 34 (99)
T ss_pred CEEEECCC-CCCHHHHHHHHHHHHHH-CCCEEEEEC--------------------------------------------
T ss_conf 98985899-77689999999999998-899699986--------------------------------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHH---HHHHHHCCCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 806872487612032079999999899985128889973888889899---99986201254357877688999999999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWT---QEVLTLSDKVVITTSLDLAGLRNSKNLID 319 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~---~~~L~~AD~vviV~~p~~~slr~a~~ll~ 319 (427)
T Consensus 35 ---------------------------------d~iiiD~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 81 (99)
T cd01983 35 ---------------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTE 81 (99)
T ss_pred ---------------------------------CCEEECCCCCCCHHHHHHHHHHHHCCEEEEECCCCHHHHHHHHHHHH
T ss_conf ---------------------------------71788589988846899998787589589965984889999999999
Q ss_pred HHHH-CCCCCCCCEEEEE
Q ss_conf 9998-1987675389995
Q gi|254780725|r 320 VLKK-LRPADKPPYLVLN 336 (427)
Q Consensus 320 ~l~~-~~~~~~~~~iVlN 336 (427)
T Consensus 82 ~~~~~~~~~~~~~~vv~n 99 (99)
T cd01983 82 VVLELAIEGLRPVGVVVN 99 (99)
T ss_pred HHHHHCCCCCCEEEEECC
T ss_conf 999841069815788539