HHsearch alignment for GI: 254780725 and conserved domain: cd03111

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.96  E-value=5.1e-29  Score=197.58  Aligned_cols=105  Identities=36%  Similarity=0.584  Sum_probs=101.5

Q ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf             79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r  163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE  242 (427)
Q Consensus       163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~  242 (427)
T Consensus         1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd-------------------------------------   43 (106)
T cd03111           1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD-------------------------------------   43 (106)
T ss_pred             CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf             9899728998668999999999999841993899965467799-------------------------------------


Q ss_pred             CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf             80687248761203207999999989998512888997388888989999986201254357877688999999999999
Q gi|254780725|r  243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLK  322 (427)
Q Consensus       243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~  322 (427)
T Consensus        44 ---------------------------------d~VVvD~~~~~~~~~~~al~~ad~i~lv~~~~lp~lrn~kr~l~~l~   90 (106)
T cd03111          44 ---------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLR   90 (106)
T ss_pred             ---------------------------------CEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf             ---------------------------------78999186553889999998679799980677489997999999999


Q ss_pred             HCCCC-CCCCEEEEEC
Q ss_conf             81987-6753899956
Q gi|254780725|r  323 KLRPA-DKPPYLVLNQ  337 (427)
Q Consensus       323 ~~~~~-~~~~~iVlNr  337 (427)
T Consensus        91 ~l~~~~~~ki~lVvNR  106 (106)
T cd03111          91 VLDYSLPAKIELVLNR  106 (106)
T ss_pred             HCCCCCCCCEEEEECC
T ss_conf             8499973656998579