HHsearch alignment for GI: 254780725 and conserved domain: cd03111
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.96 E-value=5.1e-29 Score=197.58 Aligned_cols=105 Identities=36% Similarity=0.584 Sum_probs=101.5
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCCC
Q ss_conf 79997469887756899999999996269949999787989860334389987898886318456124337653202489
Q gi|254780725|r 163 SISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYAE 242 (427)
Q Consensus 163 vIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~~ 242 (427)
T Consensus 1 vi~~~~~kGGvG~Tt~A~nlA~~la~~~~~~v~lvDldlqfGd------------------------------------- 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVDLDLQFGD------------------------------------- 43 (106)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCC-------------------------------------
T ss_conf 9899728998668999999999999841993899965467799-------------------------------------
Q ss_pred CEEEEECCCCCCCHHCCCHHHHHHHHHHHHHCCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 80687248761203207999999989998512888997388888989999986201254357877688999999999999
Q gi|254780725|r 243 NLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLK 322 (427)
Q Consensus 243 gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~~~yd~VIiD~p~~~~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~ 322 (427)
T Consensus 44 ---------------------------------d~VVvD~~~~~~~~~~~al~~ad~i~lv~~~~lp~lrn~kr~l~~l~ 90 (106)
T cd03111 44 ---------------------------------DYVVVDLGRSLDEVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLR 90 (106)
T ss_pred ---------------------------------CEEEECCCCCCCHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf ---------------------------------78999186553889999998679799980677489997999999999
Q ss_pred HCCCC-CCCCEEEEEC
Q ss_conf 81987-6753899956
Q gi|254780725|r 323 KLRPA-DKPPYLVLNQ 337 (427)
Q Consensus 323 ~~~~~-~~~~~iVlNr 337 (427)
T Consensus 91 ~l~~~~~~ki~lVvNR 106 (106)
T cd03111 91 VLDYSLPAKIELVLNR 106 (106)
T ss_pred HCCCCCCCCEEEEECC
T ss_conf 8499973656998579