HHsearch alignment for GI: 254780725 and conserved domain: cd03251
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.40 E-value=0.13 Score=29.03 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCC
Q ss_conf 567537999746988775689999999999626994999978798
Q gi|254780725|r 158 GSSGCSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLP 202 (427)
Q Consensus 158 ~~~grvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~ 202 (427)
T Consensus 25 i~~Ge~i~IvG-~sGsGKSTLl~ll~gl~~p~-~G~I~i~g~~i~ 67 (234)
T cd03251 25 IPAGETVALVG-PSGSGKSTLVNLIPRFYDVD-SGRILIDGHDVR 67 (234)
T ss_pred ECCCCEEEEEC-CCCCHHHHHHHHHHCCCCCC-CCEEEECCEECC
T ss_conf 87999999998-99982999999996676678-868999999966