HHsearch alignment for GI: 254780725 and conserved domain: cd04122
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=94.02 E-value=0.44 Score=25.80 Aligned_cols=111 Identities=10% Similarity=0.176 Sum_probs=72.0
Q ss_pred HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHH
Q ss_conf 12888997388888--98999998620125435787-7688999999999999819876753899956589875200599
Q gi|254780725|r 273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISIS 349 (427)
Q Consensus 273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~ 349 (427)
T Consensus 49 ~~~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~V~~~ 128 (166)
T cd04122 49 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYE 128 (166)
T ss_pred EEEEEEEEECCCCCCCCCCCHHHEECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCHH
T ss_conf 99999999899985444252111431546599725874767999999999999856999758703401574443899999
Q ss_pred HHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 99998489537990687999999884796189888999--89999999999985
Q gi|254780725|r 350 DFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLM 401 (427)
Q Consensus 350 ~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~ 401 (427)
T Consensus 129 e------------------~~~~a~~~~~~~~E~SAk~g~nV~e~F~~l~~~i~ 164 (166)
T cd04122 129 E------------------AKQFADENGLLFLECSAKTGENVEDAFLETAKKIY 164 (166)
T ss_pred H------------------HHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 9------------------99999986998999865878088999999999997