HHsearch alignment for GI: 254780725 and conserved domain: cd04134

>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=92.22  E-value=0.83  Score=24.12  Aligned_cols=129  Identities=12%  Similarity=0.117  Sum_probs=78.2

Q ss_pred             HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf             1288899738888--898999998620125435787-768899999-999999981987675389995658987520059
Q gi|254780725|r  273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSK-NLIDVLKKLRPADKPPYLVLNQVKTPKKPEISI  348 (427)
Q Consensus       273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~-~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~  348 (427)
T Consensus        46 ~~v~l~iwDTaGqe~~~~i~~~~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~-~~piiLVgnK~DL~~~~~---  121 (189)
T cd04134          46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARN---  121 (189)
T ss_pred             EEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECHHCCCCHH---
T ss_conf             9999999847785000035567643786459999789878999999999999997497-997899998800465323---


Q ss_pred             HHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf             999998489537990687999999884-796189888999--899999999999852212232
Q gi|254780725|r  349 SDFCAPLGITPSAIIPFDGAVFGMSAN-SGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSK  408 (427)
Q Consensus       349 ~~~~~~lg~~~~~~IP~D~~~~~~A~~-~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~  408 (427)
T Consensus       122 --~~~~~~~~~~~~is~~-eg~~~Ak~~~~~~y~EtSAkt~~nV~e~F~~lar~~l~~~~~~~  181 (189)
T cd04134         122 --ERDDLQRYGKHTISYE-EGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRPPHP  181 (189)
T ss_pred             --HHHHHHHHCCCCCCHH-HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf             --5677766304665899-99999998299789996806794989999999999973589899