HHsearch alignment for GI: 254780725 and conserved domain: cd04134
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=92.22 E-value=0.83 Score=24.12 Aligned_cols=129 Identities=12% Similarity=0.117 Sum_probs=78.2
Q ss_pred HCCCEEEECCCCC--CCHHHHHHHHHCCCCCCCCCC-CHHHHHHHH-HHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf 1288899738888--898999998620125435787-768899999-999999981987675389995658987520059
Q gi|254780725|r 273 QIFPLVILDVPHV--WNSWTQEVLTLSDKVVITTSL-DLAGLRNSK-NLIDVLKKLRPADKPPYLVLNQVKTPKKPEISI 348 (427)
Q Consensus 273 ~~yd~VIiD~p~~--~~~~~~~~L~~AD~vviV~~p-~~~slr~a~-~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~ 348 (427)
T Consensus 46 ~~v~l~iwDTaGqe~~~~i~~~~y~~a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~-~~piiLVgnK~DL~~~~~--- 121 (189)
T cd04134 46 LHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHCP-GVKLVLVALKCDLREARN--- 121 (189)
T ss_pred EEEEEEEEECCCCCCCCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCC-CCCEEEEEECHHCCCCHH---
T ss_conf 9999999847785000035567643786459999789878999999999999997497-997899998800465323---
Q ss_pred HHHHHHHCCCEEEEECCCHHHHHHHHH-CCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999998489537990687999999884-796189888999--899999999999852212232
Q gi|254780725|r 349 SDFCAPLGITPSAIIPFDGAVFGMSAN-SGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSK 408 (427)
Q Consensus 349 ~~~~~~lg~~~~~~IP~D~~~~~~A~~-~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~ 408 (427)
T Consensus 122 --~~~~~~~~~~~~is~~-eg~~~Ak~~~~~~y~EtSAkt~~nV~e~F~~lar~~l~~~~~~~ 181 (189)
T cd04134 122 --ERDDLQRYGKHTISYE-EGLAVAKRINALRYLECSAKLNRGVNEAFTEAARVALNVRPPHP 181 (189)
T ss_pred --HHHHHHHHCCCCCCHH-HHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCC
T ss_conf --5677766304665899-99999998299789996806794989999999999973589899