HHsearch alignment for GI: 254780725 and conserved domain: cd04144

>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.70  E-value=0.081  Score=30.35  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=76.7

Q ss_pred             CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHC---CCCCCCCEEEEECCCCCCCCHHH
Q ss_conf             28889973888889--899999862012543578-7768899999999999981---98767538999565898752005
Q gi|254780725|r  274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKL---RPADKPPYLVLNQVKTPKKPEIS  347 (427)
Q Consensus       274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~---~~~~~~~~iVlNr~~~~~~~~i~  347 (427)
T Consensus        46 ~~~l~iwDtaG~e~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~  125 (190)
T cd04144          46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS  125 (190)
T ss_pred             EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCC
T ss_conf             99999998999731167889982367658999727977899999999999999853379995289514553503305789


Q ss_pred             HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             9999998489537990687999999884796189888999--89999999999985221223211105899998742340
Q gi|254780725|r  348 ISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNMKC  425 (427)
Q Consensus       348 ~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~rk~  425 (427)
T Consensus       126 ~~e----------------~~--~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~k~~c  187 (190)
T cd04144         126 TEE----------------GA--ALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKC  187 (190)
T ss_pred             HHH----------------HH--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf             999----------------99--999980998999735888097999999999999877435788888776778789888


Q ss_pred             C
Q ss_conf             3
Q gi|254780725|r  426 F  426 (427)
Q Consensus       426 ~  426 (427)
T Consensus       188 ~  188 (190)
T cd04144         188 V  188 (190)
T ss_pred             E
T ss_conf             7