HHsearch alignment for GI: 254780725 and conserved domain: cd04144
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=95.70 E-value=0.081 Score=30.35 Aligned_cols=135 Identities=17% Similarity=0.208 Sum_probs=76.7
Q ss_pred CCCEEEECCCCCCC--HHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHC---CCCCCCCEEEEECCCCCCCCHHH
Q ss_conf 28889973888889--899999862012543578-7768899999999999981---98767538999565898752005
Q gi|254780725|r 274 IFPLVILDVPHVWN--SWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKL---RPADKPPYLVLNQVKTPKKPEIS 347 (427)
Q Consensus 274 ~yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~---~~~~~~~~iVlNr~~~~~~~~i~ 347 (427)
T Consensus 46 ~~~l~iwDtaG~e~~~~l~~~~~r~a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~ 125 (190)
T cd04144 46 PCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVS 125 (190)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCC
T ss_conf 99999998999731167889982367658999727977899999999999999853379995289514553503305789
Q ss_pred HHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
Q ss_conf 9999998489537990687999999884796189888999--89999999999985221223211105899998742340
Q gi|254780725|r 348 ISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKIFNMKC 425 (427)
Q Consensus 348 ~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~rk~ 425 (427)
T Consensus 126 ~~e----------------~~--~~a~~~~~~~~E~SAk~~~nV~e~F~~l~~~i~~~~~~~~~~~~~~~~~~~~~k~~c 187 (190)
T cd04144 126 TEE----------------GA--ALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKC 187 (190)
T ss_pred HHH----------------HH--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 999----------------99--999980998999735888097999999999999877435788888776778789888
Q ss_pred C
Q ss_conf 3
Q gi|254780725|r 426 F 426 (427)
Q Consensus 426 ~ 426 (427)
T Consensus 188 ~ 188 (190)
T cd04144 188 V 188 (190)
T ss_pred E
T ss_conf 7