HHsearch alignment for GI: 254780725 and conserved domain: cd04158

>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=90.56  E-value=1.1  Score=23.27  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=74.1

Q ss_pred             HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHH-HHCCCCCCCCEEEEECCCCCCCCHHHH
Q ss_conf             12888997388888--98999998620125435787-768899999999999-981987675389995658987520059
Q gi|254780725|r  273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVL-KKLRPADKPPYLVLNQVKTPKKPEISI  348 (427)
Q Consensus       273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l-~~~~~~~~~~~iVlNr~~~~~~~~i~~  348 (427)
T Consensus        41 ~~~~l~iwD~gG~~~~r~~w~~Yy~~~~~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~--~~~~  118 (169)
T cd04158          41 KNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAG--ALSV  118 (169)
T ss_pred             CCEEEEEEECCCCCCCCHHHHHHCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCC--CCCH
T ss_conf             98899999899972446367875557627999998630677999999999997127537984999973556777--9899


Q ss_pred             HHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECC--CCHHHHHHHHHHHHHHCCC
Q ss_conf             9999984895379906879999998847961898889--9989999999999985221
Q gi|254780725|r  349 SDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDP--KSAIANLLVDFSRVLMGRV  404 (427)
Q Consensus       349 ~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p--~s~~a~~~~~La~~i~gr~  404 (427)
T Consensus       119 ~ei~~~l~l~~~~------------~~~~~~i~~~SA~tG~Gi~e~~~WL~~~ii~~~  164 (169)
T cd04158         119 EEMTELLSLHKLC------------CGRSWYIQGCDARSGMGLYEGLDWLSRQLVAAG  164 (169)
T ss_pred             HHHHHHHCCHHHC------------CCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCC
T ss_conf             9999985705452------------699629995557279598999999999998657