HHsearch alignment for GI: 254780725 and conserved domain: cd04168

>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=97.62  E-value=0.001  Score=42.00  Aligned_cols=85  Identities=14%  Similarity=0.136  Sum_probs=65.3

Q ss_pred             HCCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCC-CHHHHH
Q ss_conf             12888997388888--989999986201254357877688999999999999819876753899956589875-200599
Q gi|254780725|r  273 QIFPLVILDVPHVW--NSWTQEVLTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKK-PEISIS  349 (427)
Q Consensus       273 ~~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~-~~i~~~  349 (427)
T Consensus        62 ~~~~~n~iDtPG~~dF~~e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P---~iifiNKmDre~adf~~~l~  138 (237)
T cd04168          62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIP---TIIFVNKIDRAGADLEKVYQ  138 (237)
T ss_pred             CCEEEEEEECCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCC---EEEEEECCCCCCCCHHHHHH
T ss_conf             998799988988465666898897634816999965888223449999999985998---59986244578999999999


Q ss_pred             HHHHHHCCCEE
Q ss_conf             99998489537
Q gi|254780725|r  350 DFCAPLGITPS  360 (427)
Q Consensus       350 ~~~~~lg~~~~  360 (427)
T Consensus       139 ~i~~~l~~~~~  149 (237)
T cd04168         139 EIKEKLSSDIV  149 (237)
T ss_pred             HHHHHHCCCEE
T ss_conf             99999789747