HHsearch alignment for GI: 254780725 and conserved domain: cd04176

>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=91.09  E-value=1.1  Score=23.38  Aligned_cols=108  Identities=21%  Similarity=0.279  Sum_probs=68.6

Q ss_pred             CCEEEECCCCCCC--HHHHHHHHHCCCCCCCCCC-CHHHHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf             8889973888889--8999998620125435787-7688999999999999819-8767538999565898752005999
Q gi|254780725|r  275 FPLVILDVPHVWN--SWTQEVLTLSDKVVITTSL-DLAGLRNSKNLIDVLKKLR-PADKPPYLVLNQVKTPKKPEISISD  350 (427)
Q Consensus       275 yd~VIiD~p~~~~--~~~~~~L~~AD~vviV~~p-~~~slr~a~~ll~~l~~~~-~~~~~~~iVlNr~~~~~~~~i~~~~  350 (427)
T Consensus        49 ~~l~iwDtaG~e~~~~~~~~~~~~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e  128 (163)
T cd04176          49 SVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAE  128 (163)
T ss_pred             EEEEEEECCCCHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHH
T ss_conf             99999989885425678899855786568971279889999999999999997389996399974313400127699999


Q ss_pred             HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHH
Q ss_conf             9998489537990687999999884796189888999--8999999999998
Q gi|254780725|r  351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVL  400 (427)
Q Consensus       351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i  400 (427)
T Consensus       129 ----------------~~--~~a~~~~~~~~E~SAk~~~nV~~~F~~l~~~i  162 (163)
T cd04176         129 ----------------GR--ALAEEWGCPFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             ----------------HH--HHHHHCCCEEEEECCCCCCCHHHHHHHHHHHH
T ss_conf             ----------------99--99998599899985687817799999999953