HHsearch alignment for GI: 254780725 and conserved domain: pfam00071
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=96.00 E-value=0.12 Score=29.37 Aligned_cols=110 Identities=13% Similarity=0.151 Sum_probs=71.4
Q ss_pred CCCEEEECCCCCC--CHHHHHHHHHCCCCCCCCC-CCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCCCCHHHHHH
Q ss_conf 2888997388888--9899999862012543578-776889999999999998198767538999565898752005999
Q gi|254780725|r 274 IFPLVILDVPHVW--NSWTQEVLTLSDKVVITTS-LDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISD 350 (427)
Q Consensus 274 ~yd~VIiD~p~~~--~~~~~~~L~~AD~vviV~~-p~~~slr~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~~~~i~~~~ 350 (427)
T Consensus 47 ~~~~~i~Dt~G~e~~~~~~~~~~~~ad~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e 126 (162)
T pfam00071 47 TVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEE 126 (162)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHH
T ss_conf 99999997898720467889986257655042348988999999999999998579886288997524746518899999
Q ss_pred HHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCC--HHHHHHHHHHHHHH
Q ss_conf 9998489537990687999999884796189888999--89999999999985
Q gi|254780725|r 351 FCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKS--AIANLLVDFSRVLM 401 (427)
Q Consensus 351 ~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s--~~a~~~~~La~~i~ 401 (427)
T Consensus 127 ------------------~~~~a~~~~~~y~e~Sak~g~gI~~~F~~i~~~il 161 (162)
T pfam00071 127 ------------------GEALAKELGLPFMETSAKTNENVEEAFEELAREIL 161 (162)
T ss_pred ------------------HHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHC
T ss_conf ------------------99999980997999737888299999999999967