HHsearch alignment for GI: 254780725 and conserved domain: pfam00142
>pfam00142 Fer4_NifH 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family.
Probab=100.00 E-value=1.2e-37 Score=250.71 Aligned_cols=256 Identities=16% Similarity=0.190 Sum_probs=197.8
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
T Consensus 1 r~iai-~GKGGVGKTTtsvNLA~aLA~-~GkrVlliDaD~~~~~~~~llg~~~~~~l~d~l~~~~~~~~~~~~~vi~~~~ 78 (269)
T pfam00142 1 RKIAI-YGKGGIGKSTTSQNTSAALAE-MGKKVLIVGCDPKADSTRLILGGKAQPTIIDTLREKGLVEDVELEDVVKKGY 78 (269)
T ss_pred CEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCEEEEECCCCCCCCHHHHCCCCCCCCHHHHHCCCCCCCCCCHHHHEECCC
T ss_conf 95899-899976889999999999998-7990999845899874144438988884787760467702240745013377
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHHH-----HCCCEEEECCCCCCCH--HH-HHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 9806872487612032079999999899985-----1288899738888898--99-99986201254357877688999
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDILE-----QIFPLVILDVPHVWNS--WT-QEVLTLSDKVVITTSLDLAGLRN 313 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l~-----~~yd~VIiD~p~~~~~--~~-~~~L~~AD~vviV~~p~~~slr~ 313 (427)
T Consensus 79 ~gv~~i~~~~~e~~~-~~~~~~~~~~~~~l~~~~~~~~~DyiliD~~g~~~~~~~~~~i~~~~A~~viiv~t~E~~al~~ 157 (269)
T pfam00142 79 GGIRCVESGGPEPGV-GCAGRGVITAIDLLEELGAYDDLDFVLYDVLGDVVCGGFAMPIREGKAQEVYIVTSGEMMALYA 157 (269)
T ss_pred CCCEEEECCCCCCCC-CCCHHHHHHHHHHHHHHCCHHCCCEEEEECCCCEEECCCCCCHHHCCCCEEEEEECCCHHHHHH
T ss_conf 872688689986563-2110789999999998210212888985336740243400533443588799982894789999
Q ss_pred HHHHHHHHHHCC--CCCCCCEEEEECCCCCCCCHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHCCCCEEEECCCCHHHH
Q ss_conf 999999999819--876753899956589875200599999984895379906879999998847961898889998999
Q gi|254780725|r 314 SKNLIDVLKKLR--PADKPPYLVLNQVKTPKKPEISISDFCAPLGITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIAN 391 (427)
Q Consensus 314 a~~ll~~l~~~~--~~~~~~~iVlNr~~~~~~~~i~~~~~~~~lg~~~~~~IP~D~~~~~~A~~~G~pi~e~~p~s~~a~ 391 (427)
T Consensus 158 a~~l~~~i~~~~~~~~~~i~giv~n~~~~~-~~~~~~~~~~~~~~~~~lg~IP~d~~-v~eA~~~g~pv~~~~P~S~~A~ 235 (269)
T pfam00142 158 ANNICKGILKYAKSGGVRLGGLICNSRKVD-DERELIDAFAEALGTQMIHFVPRDNI-VQKAELNKQTVIEYAPTCNQAK 235 (269)
T ss_pred HHHHHHHHHHHHCCCCCEEEEEEECCCCCC-HHHHHHHHHHHHHCCCEEEECCCCHH-HHHHHHCCCCEEEECCCCHHHH
T ss_conf 999999999985057962789982686541-15799999999819947997799826-8754234981799899998999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 9999999985221223211105899998742
Q gi|254780725|r 392 LLVDFSRVLMGRVTVSKPQSAMYTKIKKIFN 422 (427)
Q Consensus 392 ~~~~La~~i~gr~~~~~~k~~~~~~l~~lf~ 422 (427)
T Consensus 236 ay~~LA~~il~~~~~~~p~p~~~~~~~~~~~ 266 (269)
T pfam00142 236 EYRELARKIIENPEGIIPTPLTMDELEELLV 266 (269)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCHHHHHHHHH
T ss_conf 9999999998589998888699889999999