HHsearch alignment for GI: 254780725 and conserved domain: pfam00448
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=98.35 E-value=6.6e-05 Score=49.33 Aligned_cols=144 Identities=12% Similarity=0.123 Sum_probs=74.6
Q ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHCCCCCCCCHHHHHCCCCCHHHHHHHHHHHCCC
Q ss_conf 37999746988775689999999999626994999978798986033438998789888631845612433765320248
Q gi|254780725|r 162 CSISFIGSRGGVGSSTIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFYA 241 (427)
Q Consensus 162 rvIav~g~KGGvGkTTiA~nLA~~LA~~~~~~VlLvDlDl~~g~~~~~l~~~~~~~l~d~l~~~~rlD~~~l~~~l~~~~ 241 (427)
T Consensus 2 ~vi~lvG-ptGvGKTTTiaKLAa~~~~-~~~~V~lit~Dt~R~gA~eQL-----------------------~~ya~~-- 54 (196)
T pfam00448 2 NVILLVG-LQGSGKTTTIAKLAAYLKK-QGKKVLLVAADTFRAAAIEQL-----------------------KQLAER-- 54 (196)
T ss_pred EEEEEEC-CCCCCHHHHHHHHHHHHHH-CCCEEEEEECCCCCHHHHHHH-----------------------HHHHHH--
T ss_conf 6999989-9999889999999999997-799289997587768899999-----------------------999986--
Q ss_pred CCEEEEECCCCCCCHHCCCHHHHHHHHHHH-HHCCCEEEECCCCCC--CHHH----HHHHH--HCCCCCCCCCCCHHHHH
Q ss_conf 980687248761203207999999989998-512888997388888--9899----99986--20125435787768899
Q gi|254780725|r 242 ENLSILTAPAMLSRTYDFDEKMIVPVLDIL-EQIFPLVILDVPHVW--NSWT----QEVLT--LSDKVVITTSLDLAGLR 312 (427)
Q Consensus 242 ~gL~lL~a~~~~~~~~~~~~~~l~~ll~~l-~~~yd~VIiD~p~~~--~~~~----~~~L~--~AD~vviV~~p~~~slr 312 (427)
T Consensus 55 l~v~~~~~~~~-~d~----~~~~~~~l~~~~~~~~D~IlIDTaGr~~~d~~~~~el~~~~~~~~~~~~~LVl~a~~~~-~ 128 (196)
T pfam00448 55 LGVPVFGSGTG-SDP----AAVAFDAVEKAKAENYDVVLVDTAGRLQNDKNLMDELKKIKRVIAPDEVLLVLDATTGQ-N 128 (196)
T ss_pred CCCEEEECCCC-CCH----HHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCC-C
T ss_conf 39817814877-787----89999999998846899999989998747677899999998522873028998567782-1
Q ss_pred HHHHHHHHHHHCCCCCCCCEEEEECCCCCC
Q ss_conf 999999999981987675389995658987
Q gi|254780725|r 313 NSKNLIDVLKKLRPADKPPYLVLNQVKTPK 342 (427)
Q Consensus 313 ~a~~ll~~l~~~~~~~~~~~iVlNr~~~~~ 342 (427)
T Consensus 129 ~~~~~~~f~~~~~~----~~~I~TKlDet~ 154 (196)
T pfam00448 129 ALNQAKAFNEAVGI----TGVILTKLDGDA 154 (196)
T ss_pred HHHHHHHHHHHCCC----CCEEEEEECCCC
T ss_conf 37899987600477----626888405788