BLAST/PSIBLAST alignment of GI: 254780725 and GI: 116249983 at iteration 1
>gi|116249983|ref|YP_765821.1| pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 425
>gi|115254631|emb|CAK05705.1| putative pilus assembly protein [Rhizobium leguminosarum bv. viciae 3841] Length = 425
 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 209/410 (50%), Positives = 290/410 (70%), Gaps = 9/410 (2%)

Query: 3   IGYDGHNSDFLENEDNLS-----ESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVN 57
           I Y+  N   L N +        E+M  LPRISVH FC ++ L  V+ER   D R+++V+
Sbjct: 4   IEYEIRNPSELRNAEEAVRMADLENMRPLPRISVHAFCESEALQHVMERCANDRRVAKVS 63

Query: 58  MRITRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTND 117
           MRIT G +A A + FS + TP+LII++TK ++  +L  L PLA VCD  TKV++IG  ND
Sbjct: 64  MRITSGGVAAAANMFSGAPTPNLIILETKANAANLLGELAPLAAVCDPTTKVVIIGYYND 123

Query: 118 VSLYRALISNHVSEYLIEPLSVADIINSISAIFT-PQEEGKGSSGCSISFIGSRGGVGSS 176
           + LYR LI N +SEY+++P+++ DI+ ++++IF  P  E  G S   I+FIGS+GG G+S
Sbjct: 124 IGLYRELIRNGISEYMVQPVAMPDILTAMASIFVDPDAEPLGRS---IAFIGSKGGTGAS 180

Query: 177 TIAHNCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRL 236
           TIAHNCAF I+++F+ ET+LADLDLPYGTANI+FD+DP   I++A++   R+D+ F+ RL
Sbjct: 181 TIAHNCAFGISNLFSTETILADLDLPYGTANIDFDQDPAQGIAEAVFAPDRLDEVFLDRL 240

Query: 237 PVFYAENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTL 296
               +E+LS+L AP++L R YDFD +   PVLD+L++  P+ +LDVPH W+ WT+ VL+ 
Sbjct: 241 LTKCSEHLSLLAAPSLLDRAYDFDGQAFQPVLDVLQRSAPVTVLDVPHAWSEWTRSVLSS 300

Query: 297 SDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLG 356
            D+VVI    DLA LRN+KN++D L+K+RP D+PP+L+LNQV  PK+PEIS SDFC PL 
Sbjct: 301 VDEVVIAAVPDLANLRNAKNMLDALRKMRPNDRPPHLILNQVGMPKRPEISPSDFCEPLE 360

Query: 357 ITPSAIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTV 406
           I P AIIPFD  +FG +ANSG+MI EVDPKS  A      S ++ GRV +
Sbjct: 361 IDPIAIIPFDINLFGNAANSGRMISEVDPKSPTAETFSQISHIVTGRVAI 410