BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] (427 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter asiaticus str. psy62] Length = 427 Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust. Identities = 427/427 (100%), Positives = 427/427 (100%) Query: 1 MNIGYDGHNSDFLENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI 60 MNIGYDGHNSDFLENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI Sbjct: 1 MNIGYDGHNSDFLENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI 60 Query: 61 TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSL 120 TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSL Sbjct: 61 TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSL 120 Query: 121 YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAH 180 YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAH Sbjct: 121 YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAH 180 Query: 181 NCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 NCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY Sbjct: 181 NCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240 Query: 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKV 300 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKV Sbjct: 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKV 300 Query: 301 VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPS 360 VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPS Sbjct: 301 VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPS 360 Query: 361 AIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKI 420 AIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKI Sbjct: 361 AIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKI 420 Query: 421 FNMKCFS 427 FNMKCFS Sbjct: 421 FNMKCFS 427 >gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 423 Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust. Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%) Query: 203 YGTANINFDKDPINSISDAIY---PVGRIDKAFVSRL-------PVFYAE---NL-SILT 248 +G + + D + +N + Y P I K RL P FY N+ ++L+ Sbjct: 173 FGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLS 232 Query: 249 APAMLSRTYDFDEKMI---VPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTS 305 ++RT F + I + V DI+ + F L ++ VP SWT + + I+ + Sbjct: 233 LREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVA 292 Query: 306 LDLAG 310 + + G Sbjct: 293 VSIPG 297 >537021.9.peg.1074_1 Length = 169 Score = 26.9 bits (58), Expect = 0.65, Method: Compositional matrix adjust. Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%) Query: 294 LTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK-KPEISISDFC 352 +T+ + IT+S N ++L DV+ ++ P D P Y ++ + T PE + D Sbjct: 1 MTIVNNTFITSS----STTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLA 56 Query: 353 APLGITPSAIIPFDGAVF 370 +P P+A + D F Sbjct: 57 SP---GPNAQLEGDEYSF 71 >gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus Liberibacter asiaticus str. psy62] Length = 608 Score = 23.9 bits (50), Expect = 4.9, Method: Compositional matrix adjust. Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%) Query: 14 ENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGS 64 E E L S+ +PR +F V +YS +E+ Q + + RGS Sbjct: 426 EQERELIRSLVEIPR---KMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGS 473 >gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62] Length = 440 Score = 23.5 bits (49), Expect = 8.0, Method: Compositional matrix adjust. Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%) Query: 99 LAEVCDSGTKVIVIGDTN--DVSLYRALISNHVS 130 L E+ +G K++++G +N SL+ AL V+ Sbjct: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 >gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter asiaticus str. psy62] Length = 396 Score = 23.1 bits (48), Expect = 10.0, Method: Compositional matrix adjust. Identities = 15/49 (30%), Positives = 21/49 (42%) Query: 90 REVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLS 138 RE L LE +A V V D + + + L HV + + PLS Sbjct: 338 REKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLS 386 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.135 0.386 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 264,850 Number of Sequences: 1233 Number of extensions: 10851 Number of successful extensions: 32 Number of sequences better than 100.0: 10 Number of HSP's better than 100.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 25 Number of HSP's gapped (non-prelim): 10 length of query: 427 length of database: 328,796 effective HSP length: 76 effective length of query: 351 effective length of database: 235,088 effective search space: 82515888 effective search space used: 82515888 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 40 (20.0 bits)