BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254780725|ref|YP_003065138.1| response regulator receiver
protein [Candidatus Liberibacter asiaticus str. psy62]
(427 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254780725|ref|YP_003065138.1| response regulator receiver protein [Candidatus Liberibacter
asiaticus str. psy62]
Length = 427
Score = 867 bits (2240), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 427/427 (100%), Positives = 427/427 (100%)
Query: 1 MNIGYDGHNSDFLENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI 60
MNIGYDGHNSDFLENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI
Sbjct: 1 MNIGYDGHNSDFLENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRI 60
Query: 61 TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSL 120
TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSL
Sbjct: 61 TRGSIAEAVSCFSDSSTPDLIIVQTKVDSREVLSALEPLAEVCDSGTKVIVIGDTNDVSL 120
Query: 121 YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAH 180
YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAH
Sbjct: 121 YRALISNHVSEYLIEPLSVADIINSISAIFTPQEEGKGSSGCSISFIGSRGGVGSSTIAH 180
Query: 181 NCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240
NCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY
Sbjct: 181 NCAFSIASVFAMETLLADLDLPYGTANINFDKDPINSISDAIYPVGRIDKAFVSRLPVFY 240
Query: 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKV 300
AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKV
Sbjct: 241 AENLSILTAPAMLSRTYDFDEKMIVPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKV 300
Query: 301 VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPS 360
VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPS
Sbjct: 301 VITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPKKPEISISDFCAPLGITPS 360
Query: 361 AIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKI 420
AIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKI
Sbjct: 361 AIIPFDGAVFGMSANSGKMIHEVDPKSAIANLLVDFSRVLMGRVTVSKPQSAMYTKIKKI 420
Query: 421 FNMKCFS 427
FNMKCFS
Sbjct: 421 FNMKCFS 427
>gi|254780674|ref|YP_003065087.1| pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase
[Candidatus Liberibacter asiaticus str. psy62]
Length = 423
Score = 31.2 bits (69), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 17/125 (13%)
Query: 203 YGTANINFDKDPINSISDAIY---PVGRIDKAFVSRL-------PVFYAE---NL-SILT 248
+G + + D + +N + Y P I K RL P FY N+ ++L+
Sbjct: 173 FGLVDESIDANILNLFAKDSYEVIPHDNIRKTIACRLQQSKQTIPHFYVSIDCNIDNLLS 232
Query: 249 APAMLSRTYDFDEKMI---VPVLDILEQIFPLVILDVPHVWNSWTQEVLTLSDKVVITTS 305
++RT F + I + V DI+ + F L ++ VP SWT + + I+ +
Sbjct: 233 LREQMNRTLQFHREEISNKISVNDIILKAFALAMIQVPEANVSWTTNAMIRHKHIDISVA 292
Query: 306 LDLAG 310
+ + G
Sbjct: 293 VSIPG 297
>537021.9.peg.1074_1
Length = 169
Score = 26.9 bits (58), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 8/78 (10%)
Query: 294 LTLSDKVVITTSLDLAGLRNSKNLIDVLKKLRPADKPPYLVLNQVKTPK-KPEISISDFC 352
+T+ + IT+S N ++L DV+ ++ P D P Y ++ + T PE + D
Sbjct: 1 MTIVNNTFITSS----STTNKESLSDVVSRITPEDTPIYSMIKKGTTHSIHPEWVVDDLA 56
Query: 353 APLGITPSAIIPFDGAVF 370
+P P+A + D F
Sbjct: 57 SP---GPNAQLEGDEYSF 71
>gi|254780943|ref|YP_003065356.1| glucosamine--fructose-6-phosphate aminotransferase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 608
Score = 23.9 bits (50), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Query: 14 ENEDNLSESMCSLPRISVHVFCVTDTLYSVVERSKIDPRMSQVNMRITRGS 64
E E L S+ +PR +F V +YS +E+ Q + + RGS
Sbjct: 426 EQERELIRSLVEIPR---KMFDVLQNIYSQIEKLCCGLAKCQTLLYVGRGS 473
>gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus
str. psy62]
Length = 440
Score = 23.5 bits (49), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 99 LAEVCDSGTKVIVIGDTN--DVSLYRALISNHVS 130
L E+ +G K++++G +N SL+ AL V+
Sbjct: 212 LGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVA 245
>gi|254780558|ref|YP_003064971.1| hypothetical protein CLIBASIA_02225 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 396
Score = 23.1 bits (48), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 21/49 (42%)
Query: 90 REVLSALEPLAEVCDSGTKVIVIGDTNDVSLYRALISNHVSEYLIEPLS 138
RE L LE +A V V D + + + L HV + + PLS
Sbjct: 338 REKLKGLEEIARTTGQAIGVAVAFDESIEVISQWLQQEHVRDVSVVPLS 386
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.319 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 264,850
Number of Sequences: 1233
Number of extensions: 10851
Number of successful extensions: 32
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 25
Number of HSP's gapped (non-prelim): 10
length of query: 427
length of database: 328,796
effective HSP length: 76
effective length of query: 351
effective length of database: 235,088
effective search space: 82515888
effective search space used: 82515888
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 40 (20.0 bits)