HHsearch alignment for GI: 254780727 and conserved domain: COG1450
>COG1450 PulD Type II secretory pathway, component PulD [Cell motility and secretion / Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=364.99 Aligned_cols=239 Identities=26% Similarity=0.424 Sum_probs=193.1
Q ss_pred CEEEEEECCCCCEEEEEEEEEEEECHHHHHCCCEEEECCCCCCCCCCCCCCCCCCC---CCCCCCCEEE-EECCCCCHHH
Q ss_conf 30355432777227999999998500144226121001454336443545566666---6665430334-2037741431
Q gi|254780727|r 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKF---VSEGGDFSVK-GVLDRFSFET 258 (474)
Q Consensus 183 ~vvn~l~v~~~~QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~ 258 (474)
T Consensus 301 ~lI~~LD~~-~~QV~Iea~Ivevs~~~~~~lGv~W~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~a 379 (587)
T COG1450 301 ELIEKLDVR-PKQVEIEASIVEVSLNDLEQLGVNWSALNSGGGKVGNTNSSLGNAGLSGGALAGLVSGINTGAGKSNFDA 379 (587)
T ss_pred HHHHHHCCC-CCEEEEEEEEEEEECCCHHHHCCCCHHHCCCCCCEEECCCEECCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 999975567-5269999999995267136639300521776772430221021577676533333344453446532999
Q ss_pred HHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEE-----CCCCCCCEEEEEEEEEEEEEEEEEEECCCEEEEEEE
Q ss_conf 102377359758984223898759467575247300000-----136776204689887589999989815984999861
Q gi|254780727|r 259 VLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKT-----VSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQ 333 (474)
Q Consensus 259 ~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~-----~~~~~~~~~v~~~~~Gi~L~vtP~V~~~g~I~L~i~ 333 (474)
T Consensus 380 ~inaL~~~~~~~VlS~Psl~tlnN~~A~i~VGq~vp-~~~~~~~~~~g~~~~~~~~~~~Gv~LkVtP~I~~~~~v~L~Ie 458 (587)
T COG1450 380 LINALSQNGDANVLSTPSLLTLNNQQAIIDVGQDVP-QTGTSYTKVTGEKTATLERIDVGVMLKVTPRINDDGRVLLDIE 458 (587)
T ss_pred HHHHHHHCCCCEEEECCEEEEECCCCEEEECCCCCC-CCEEEEEECCCCEEEEEEEEEEEEEEEEEEEECCCCEEEEEEE
T ss_conf 998987658947973788998248607987675346-6137998357843445778872079998778848985899984
Q ss_pred EEECCCCCC---CCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCCCCCCEEEE
Q ss_conf 232034455---55665321678999999998589989999766531013212571120176120001656455211599
Q gi|254780727|r 334 TEVSEPVIG---VNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEI 410 (474)
Q Consensus 334 ~evS~~~~~---~~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tEL 410 (474)
T Consensus 459 qevs~~~~~~~~~~~~~~p~~~~r~I~T~v~v~dG~slvlGGLi~d~~s~s~skVP~LGdIP~iG~LFr~t~~~~~kt~l 538 (587)
T COG1450 459 QEVSSVATSDSVTSNDPLPTTNKREITTEVRVKDGDSLLLGGLIQDKQSDSVSKVPFLGDIPLIGSLFRSTSKTRKKTEL 538 (587)
T ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCEEEE
T ss_conf 15545566654335687863531463579994689999981376525242013886676564311442462000232899
Q ss_pred EEEEECEECCCCC
Q ss_conf 9999051503468
Q gi|254780727|r 411 FIAATPFLVKPVA 423 (474)
Q Consensus 411 vI~iTP~iV~p~~ 423 (474)
T Consensus 539 ~~fI~P~ii~~~~ 551 (587)
T COG1450 539 MFFITPRIIRSPA 551 (587)
T ss_pred EEEEEEEEECCCH
T ss_conf 9998879925803