HHsearch alignment for GI: 254780727 and conserved domain: COG4796
>COG4796 HofQ Type II secretory pathway, component HofQ [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=287.01 Aligned_cols=229 Identities=25% Similarity=0.370 Sum_probs=191.5
Q ss_pred CCEEEEEEEEEEEECHHHHHCCCEEEECCCCCCC----------CCC-----------CCCCCCCCCCCC-CCCCEEEEE
Q ss_conf 7227999999998500144226121001454336----------443-----------545566666666-543033420
Q gi|254780727|r 193 EDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGP----------SKS-----------FAADFGGKFVSE-GGDFSVKGV 250 (474)
Q Consensus 193 ~~QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~~----------~~~-----------~~~~~~~~~~~~-~~~~~~~~~ 250 (474)
T Consensus 455 ~~qv~i~a~ivtv~~~~~~elgv~~gl~~~~~~~~~~~~~l~~~~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 534 (709)
T COG4796 455 VNQVIIEARIVTVLKLSLRELGVLWGLIQTTDRELGGIGALGRLFFSQGDNAVKNEIVLNITLPVTTPTVGSITLGFARI 534 (709)
T ss_pred HHHEEEEEEEEEEEECCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEC
T ss_conf 45606775456775235765555763112355555677632345433467752244214303577566657651331100
Q ss_pred CCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCCCC--CEEEEEEEEEEEEEEEEEEECCCEE
Q ss_conf 37741431102377359758984223898759467575247300000136776--2046898875899999898159849
Q gi|254780727|r 251 LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTG--ATSVTTHDYGVVLHFTPTVLSPGRI 328 (474)
Q Consensus 251 ~~~~~~~~~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~~~--~~~v~~~~~Gi~L~vtP~V~~~g~I 328 (474)
T Consensus 535 ~~~~~L~leLsA~e~~~~~~ilasPrlit~~~~~A~I~~G~eip~~~~s~~~~~t~~~v~f~~a~l~l~VtP~I~~d~~i 614 (709)
T COG4796 535 GGGPLLDLELSALEQEGRAKILASPRLITANGEPASIKQGTEIPYQVASGGGGGTITSVEFKEAVLGLEVTPRITPDGRI 614 (709)
T ss_pred CCCCCCCEECCHHHHCCCCCCCCCCEEEECCCCCEEECCCCCCCEEECCCCCCCCCCCCCCCCCCCCCEECCEECCCCCE
T ss_conf 68721033045023406876315881374378741522676466153146777656675301122341443235689967
Q ss_pred EEEEEEEECCCCCCCC--CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCCCCCC
Q ss_conf 9986123203445555--66532167899999999858998999976653101321257112017612000165645521
Q gi|254780727|r 329 GLRIQTEVSEPVIGVN--AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNRE 406 (474)
Q Consensus 329 ~L~i~~evS~~~~~~~--~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~ 406 (474)
T Consensus 615 ~L~~~~~~~~p~~~~~~~~~~i~~i~~~ei~t~v~v~~G~TvvlgGi~~~~~~~t~skVPlLgdiP~iG~lFr~~~~~~~ 694 (709)
T COG4796 615 FLDLFVTQDSPGQVQVIGVGEIPLISKQEINTQVIVKNGETVVLGGIFQEADRSTVSKVPLLGDIPVIGALFRTTTKTTE 694 (709)
T ss_pred EEEEEEEECCCCCEEECCCCCCCCCCHHHHCCCCEECCCCEEEEECEEEECCCCCCCCCCCCCCCCCCHHHHHCCCCCCC
T ss_conf 98743351277734432677522124656055524316957997021440566764556515546410334201355566
Q ss_pred EEEEEEEEECEECCC
Q ss_conf 159999990515034
Q gi|254780727|r 407 ETEIFIAATPFLVKP 421 (474)
Q Consensus 407 ~tELvI~iTP~iV~p 421 (474)
T Consensus 695 rrEl~IfiTP~i~~~ 709 (709)
T COG4796 695 RRELLIFITPRIIEP 709 (709)
T ss_pred CCCEEEEECCCCCCC
T ss_conf 663258825756789