HHsearch alignment for GI: 254780727 and conserved domain: COG4964
>COG4964 CpaC Flp pilus assembly protein, secretin CpaC [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=633.38 Aligned_cols=427 Identities=41% Similarity=0.658 Sum_probs=379.3
Q ss_pred CCCCCCCCCCCCCEEEEEECCEEEEECCCCHHHEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEECCCCCEEEEEEEE
Q ss_conf 33332234565402799507259995377633078537343799971698799995267227999988999778999873
Q gi|254780727|r 36 VINISDVEIGKGKKISIGLNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHDGKQMLNLDIL 115 (474)
Q Consensus 36 ~~~~~~~~~~~~~~l~l~~g~s~~l~~~~~~~rV~V~dp~Vadv~v~s~~~i~i~gk~~G~T~l~v~~~~g~~~~~~~v~ 115 (474)
T Consensus 21 ~~~i~~ss~~~~~t~~l~~~~~~~v~l~~~~~~i~Vg~p~iada~~~~~~~iyi~gk~~Gtt~v~~fg~~g~~~~~~~i~ 100 (455)
T COG4964 21 VARIALSSASATKTLKLELGKSKTVVLPSDADDILVGDPNIADAVLLTDRSIYILGKSVGTTNVFVFGEEGRSIVSLDIE 100 (455)
T ss_pred HHHHHHCCCCHHHEEEECCCCCEEEECCCCHHEEEECCCCHHCCCCCCCCEEEEEECCCCEEEEEEECCCCCCCCCCEEE
T ss_conf 55410046641005761468735897246200168758202101304786499994378804789986888530220058
Q ss_pred CCCCHHHHHHHHHHHCCCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEE-EEECCCCC
Q ss_conf 04541478999998578771699983894999997199999999999999861223455555665443035-54327772
Q gi|254780727|r 116 IERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMN-LLNIAGED 194 (474)
Q Consensus 116 v~~d~~~l~~~l~~~~p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~vvn-~l~v~~~~ 194 (474)
T Consensus 101 v~~d~~~l~~~i~~~~P~s~i~V~~~~~~vvl~Gs~~~~~~a~~a~~ia~~~~g~~-----------e~~~s~~~v~~~~ 169 (455)
T COG4964 101 VTRDTSGLGAPIRAVIPDSRIKVSSVNDRVVLSGSVRTAVDAESAVRIASQFLGGG-----------EVTNSLITVAGSQ 169 (455)
T ss_pred EECCHHHHHHHHHHHCCCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHHCCCCCC-----------CEECCCEEECCCC
T ss_conf 73485786546886488870489753785699875086898888776665017986-----------0441215761688
Q ss_pred EEEEEEEEEEEECHHHHHCCCEEEECCCCCCC--CCCCCCCCCCCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCEEE
Q ss_conf 27999999998500144226121001454336--4435455666666-66543033420377414311023773597589
Q gi|254780727|r 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGP--SKSFAADFGGKFV-SEGGDFSVKGVLDRFSFETVLHALERATAIRT 271 (474)
Q Consensus 195 QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~aL~~~g~a~i 271 (474)
T Consensus 170 QV~l~VrvvEVsr~v~k~LG~~~~~~g~~~g~~~~~g~~~~~~~~~~~~~g~~~G~l~~~n~~~~~~~i~Ale~~G~~r~ 249 (455)
T COG4964 170 QVQLKVRVVEVSRSVLKQLGANLSARGGFSGGPVSFGALAVLGTGLGLEKGTTFGSLLSDNGVSIDAYINALEANGLART 249 (455)
T ss_pred EEEEEEEEEEEEHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEHHHHCCCCEEE
T ss_conf 26899999998278898506206641131577541244445677545555544231036788350134033640885588
Q ss_pred EECCEEEEECCCEEEEEECCCEEEEECCCCCCCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEECCCCC----CCCCCC
Q ss_conf 8422389875946757524730000013677620468988758999998981598499986123203445----555665
Q gi|254780727|r 272 LAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSEPVI----GVNAGD 347 (474)
Q Consensus 272 La~P~l~t~sgq~A~~~~G~e~pi~~~~~~~~~~~v~~~~~Gi~L~vtP~V~~~g~I~L~i~~evS~~~~----~~~~~~ 347 (474)
T Consensus 250 LAePnL~a~SGe~AsFlaGGEfpip~~~d~~g~~TI~yk~fGv~L~ftPtVl~~gRI~L~v~peVSel~~~g~v~~~~~t 329 (455)
T COG4964 250 LAEPNLTALSGETASFLAGGEFPIPVPDDKNGNVTIEYKEFGVGLTFTPTVLSNGRISLKVAPEVSELDYSGSVAVGGGT 329 (455)
T ss_pred ECCCCEEEECCCCHHHHCCCEECCCCCCCCCCCEEEEEEECCCCEEEEEEEEECCEEEEEECCCCCCCCCCCCEEECCCC
T ss_conf 51575223056400221376250356667788278999961665058617802877887644531246766757878823
Q ss_pred CCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEEEEECEECCCCCHHHC
Q ss_conf 32167899999999858998999976653101321257112017612000165645521159999990515034686552
Q gi|254780727|r 348 MPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKPVAMRDL 427 (474)
Q Consensus 348 ~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP~iV~p~~~~~~ 427 (474)
T Consensus 330 vP~~t~rradTtVeL~sGqSf~I~GL~qs~~~~~~~~vP~lG~iPIlGalFRs~~~~r~etELviIVTP~lVkP~~p~~~ 409 (455)
T COG4964 330 VPGLTTRRADTTVELASGQSFVIGGLLQSNVRGAVDKVPGLGDIPILGALFRSKDFQRNETELVIIVTPYLVKPVAPGQL 409 (455)
T ss_pred CCCEEEEEEEEEEEECCCCEEEEEEEEECCHHHHHHCCCCCCCCCCHHHHHHCCCCCCCCCEEEEEECCCCCCCCCHHHC
T ss_conf 43158886001699058987999512101413466428887667502555422001567634899963551220685314
Q ss_pred CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 68754754776200011030023467776666666564334312769
Q gi|254780727|r 428 SRPDDHYSVEDDAKAFFFNRVNKIYGPKEASEVEGQNYKGAIGFIYK 474 (474)
Q Consensus 428 ~~p~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Gf~~~ 474 (474)
T Consensus 410 ~~p~~~~t~~~d~~~~~~~~~~~v~~~~~g~~-~~~~~~g~~g~v~~ 455 (455)
T COG4964 410 PAPPDDFTPASDPALYFLGNVNRVYGFPAGQT-DAARYGGAVGFVIK 455 (455)
T ss_pred CCCCCCCCCCCCCCHHCCCCCCEEEECCCCCC-CCCCCCCCCCEEEC
T ss_conf 58975668667721110355640476146765-56566763005769