HHsearch alignment for GI: 254780727 and conserved domain: TIGR02515
>TIGR02515 IV_pilus_PilQ type IV pilus secretin PilQ; InterPro: IPR013355 A number of proteins homologous to PilQ are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family include PilQ itself, which is a component of the type IV pilus structure, from a number of species. In Haemophilus influenzae, the member of this family is associated with the uptake of exogenous DNA, rather than with formation of a type IV pilus - the surface structure required for this may be considered an unusual, incomplete type IV pilus structure.; GO: 0009297 pilus biogenesis, 0009306 protein secretion.
Probab=100.00 E-value=0 Score=400.31 Aligned_cols=267 Identities=22% Similarity=0.387 Sum_probs=212.6
Q ss_pred HHC-CCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEEC
Q ss_conf 857-8771699983894999997199999999999999861223455555665443035543277722799999999850
Q gi|254780727|r 129 RFI-ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRR 207 (474)
Q Consensus 129 ~~~-p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~vvn~l~v~~~~QV~lev~i~EVs~ 207 (474)
T Consensus 152 ~~LS~RGSvt~D~RTN~Liv~D~---~~~l~~~r~---------------------li~~lD~P-v~QV~IEARIVea~~ 206 (464)
T TIGR02515 152 AVLSERGSVTVDPRTNTLIVTDI---PEKLARIRE---------------------LIAELDIP-VKQVLIEARIVEATD 206 (464)
T ss_pred HHCCCCCCEEEECCCCEEEEEEC---HHHHHHHHH---------------------HHHHCCCC-CCCEEEEEEEEEEEC
T ss_conf 20389860897424253878621---578999999---------------------99961898-433899647999830
Q ss_pred HHHHHCCCEEEECCCCCCCCCCC---------------CCCC-----------------CCCCCCC------CCCCEEEE
Q ss_conf 01442261210014543364435---------------4556-----------------6666666------54303342
Q gi|254780727|r 208 DILKQIGFQHSITGSSSGPSKSF---------------AADF-----------------GGKFVSE------GGDFSVKG 249 (474)
Q Consensus 208 ~~~~~lGi~w~~~~~~~~~~~~~---------------~~~~-----------------~~~~~~~------~~~~~~~~ 249 (474)
T Consensus 207 ~f~r~LGv~wG~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~nv~l~~~t~~~gsgGa~~~~~~~~~ 286 (464)
T TIGR02515 207 SFARELGVRWGIADKTTNGNGTLGGIGSSTGTGATGVVSSTLAGGTMNPPIGDNLNVNLATATTAGGSGGAAAISFALGK 286 (464)
T ss_pred CCCCCCEEEECCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 61100606723435643246531013625666121642477877654777788763466356656544245788777654
Q ss_pred ECC-CCCHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCC----CCCEEEEEEEEEEEEEEEEEEEC
Q ss_conf 037-7414311023773597589842238987594675752473000001367----76204689887589999989815
Q gi|254780727|r 250 VLD-RFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS----TGATSVTTHDYGVVLHFTPTVLS 324 (474)
Q Consensus 250 ~~~-~~~~~~~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~----~~~~~v~~~~~Gi~L~vtP~V~~ 324 (474)
T Consensus 287 ~~~g~~~LdLELSAle~e~~~eiissPrv~T~d~~~A~I~qG~EIPY~~~s~~G~~~~~~~~v~FKeAvL~LeVTP~ITp 366 (464)
T TIGR02515 287 LGSGGVLLDLELSALESEGKGEIISSPRVVTADNKKAKIEQGTEIPYQQTSSSGTGASSATSVEFKEAVLSLEVTPQITP 366 (464)
T ss_pred HHCCCCHHHHHHHHHHHHCCCCEEECCEEEEECCCEEEEECCEEECEEEECCCCCCCCCEEEEEEEEEEEECCCCCEECC
T ss_conf 40454014689999986188138765818720685557731546041898066200674217999998750531311656
Q ss_pred CCEEEEEEEEEECCCC--CCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCC
Q ss_conf 9849998612320344--55556653216789999999985899899997665310132125711201761200016564
Q gi|254780727|r 325 PGRIGLRIQTEVSEPV--IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSR 402 (474)
Q Consensus 325 ~g~I~L~i~~evS~~~--~~~~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~ 402 (474)
T Consensus 367 Dg~i~M~~~v~kd~~g~~~~~a~~~~~~I~k~ei~T~VlV~nGeTvViGGIY~~~~~~~~~kVPfLGDIP~lG~LFk~~~ 446 (464)
T TIGR02515 367 DGRIIMDLKVSKDSPGAVVSQAGGGVPAIDKREINTQVLVKNGETVVIGGIYEQTQTNSVNKVPFLGDIPVLGNLFKKTA 446 (464)
T ss_pred CCCEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCEEEEEEEEEEECCCCCCCCCEECCCCCEEHEEECCC
T ss_conf 99389998871077875034678701504402677899972588899812898515644245511134560111011166
Q ss_pred CCCCEEEEEEEEECEECC
Q ss_conf 552115999999051503
Q gi|254780727|r 403 FNREETEIFIAATPFLVK 420 (474)
Q Consensus 403 ~~~~~tELvI~iTP~iV~ 420 (474)
T Consensus 447 ~~~~K~ELLIFiTPri~~ 464 (464)
T TIGR02515 447 KSDEKSELLIFITPRIVN 464 (464)
T ss_pred CEEECEEEEEEECCEECC
T ss_conf 311110431887565749