HHsearch alignment for GI: 254780727 and conserved domain: TIGR02517

>TIGR02517 type_II_gspD general secretion pathway protein D; InterPro: IPR013356 In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (IPR013355 from INTERPRO) and to the type III secretion system pore YscC/HrcC (IPR003522 from INTERPRO).; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex, 0019867 outer membrane.
Probab=100.00  E-value=0  Score=412.00  Aligned_cols=238  Identities=28%  Similarity=0.424  Sum_probs=196.4

Q ss_pred             CEEEEEECCCCCEEEEEEEEEEEECHHHHHCCCEEEECCCCCCCCCCCCC----------CCCC--CCCC----------
Q ss_conf             30355432777227999999998500144226121001454336443545----------5666--6666----------
Q gi|254780727|r  183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----------DFGG--KFVS----------  240 (474)
Q Consensus       183 ~vvn~l~v~~~~QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~~~~~~~~----------~~~~--~~~~----------  240 (474)
T Consensus       405 ~VI~~LD~r-R~QV~vEA~IvEvs~~~~~~~Gvqw~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~  483 (697)
T TIGR02517       405 EVIKQLDKR-RAQVLVEAIIVEVSLDDALELGVQWLIAGTGGTVGFGLVNGSTGAGNSGSLLGASASAINPDTAASKLLG  483 (697)
T ss_pred             HHHHHHCCC-CCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf             999983889-7664899999999708873220456761344120421204655555420001222336677741001101


Q ss_pred             ----------CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCCC-----C--
Q ss_conf             ----------65430334203774143110237735975898422389875946757524730000013677-----6--
Q gi|254780727|r  241 ----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----G--  303 (474)
Q Consensus       241 ----------~~~~~~~~~~~~~~~~~~~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~~-----~--  303 (474)
T Consensus       484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Al~~~~~~NvLSTP~~lTlDN~eA~I~VGQ~VPv~tg~~~~Gt~~~~~~  563 (697)
T TIGR02517       484 SAGIGLLVTSSSTTSGVGGTGGIPNLGVLLNALKQDTGFNVLSTPSLLTLDNEEAEINVGQEVPVLTGSYNTGTGTGGTN  563 (697)
T ss_pred             HEECCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCEEEEEECCCCCCCCCEEEEEEEEECCC
T ss_conf             10016650101212322100356234578875302657116877806763032146751767222365021155630545


Q ss_pred             ---CEEEEEEEEEEEEEEEEEEE-CCCEEEEEEEEEECCCC----CCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf             ---20468988758999998981-59849998612320344----55556653216789999999985899899997665
Q gi|254780727|r  304 ---ATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK  375 (474)
Q Consensus       304 ---~~~v~~~~~Gi~L~vtP~V~-~~g~I~L~i~~evS~~~----~~~~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~  375 (474)
T Consensus       564 ~n~f~t~~r~~vG~~L~v~PqIn~eg~~v~L~I~Qevs~~~~~~~~~~~~~~~~~~nkR~i~t~v~V~dg~tvVLGGLi~  643 (697)
T TIGR02517       564 ANPFNTVERKDVGIKLKVTPQINGEGGTVRLEIYQEVSSVAPATGTVASAATGPTFNKREIKTSVLVDDGDTVVLGGLIQ  643 (697)
T ss_pred             CCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCEEEEEEEEC
T ss_conf             53143016887228998887783799869999986341333546412024577411114898899962798899866413


Q ss_pred             EEECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEEEEECEECCC
Q ss_conf             3101321257112017612000165645521159999990515034
Q gi|254780727|r  376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP  421 (474)
Q Consensus       376 ~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP~iV~p  421 (474)
T Consensus       644 d~~~~~~~kvPlLGDIP~lG~LFr~~~~~~~KTNLmVFitP~Iir~  689 (697)
T TIGR02517       644 DKTSESVTKVPLLGDIPVLGRLFRSTTKERTKTNLMVFITPRIIRD  689 (697)
T ss_pred             CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEECC
T ss_conf             7510110134345785611011576673233316899960778779