HHsearch alignment for GI: 254780727 and conserved domain: TIGR02517
>TIGR02517 type_II_gspD general secretion pathway protein D; InterPro: IPR013356 In Gram-negative bacteria, proteins that have first crossed the inner member by Sec-dependent protein transport can be exported across the outer membrane by type II secretion (also referred to as the main terminal branch of the general secretion pathway). Members of this family are general secretion pathway protein D. In Yersinia enterocolitica, a second member of this family is part of a novel second type II secretion system specifically associated with virulence (See ). This family is closely homologous to the type IV pilus outer membrane secretin PilQ (IPR013355 from INTERPRO) and to the type III secretion system pore YscC/HrcC (IPR003522 from INTERPRO).; GO: 0008565 protein transporter activity, 0015628 protein secretion by the type II secretion system, 0015627 type II protein secretion system complex, 0019867 outer membrane.
Probab=100.00 E-value=0 Score=412.00 Aligned_cols=238 Identities=28% Similarity=0.424 Sum_probs=196.4
Q ss_pred CEEEEEECCCCCEEEEEEEEEEEECHHHHHCCCEEEECCCCCCCCCCCCC----------CCCC--CCCC----------
Q ss_conf 30355432777227999999998500144226121001454336443545----------5666--6666----------
Q gi|254780727|r 183 KVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAA----------DFGG--KFVS---------- 240 (474)
Q Consensus 183 ~vvn~l~v~~~~QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~~~~~~~~----------~~~~--~~~~---------- 240 (474)
T Consensus 405 ~VI~~LD~r-R~QV~vEA~IvEvs~~~~~~~Gvqw~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~ 483 (697)
T TIGR02517 405 EVIKQLDKR-RAQVLVEAIIVEVSLDDALELGVQWLIAGTGGTVGFGLVNGSTGAGNSGSLLGASASAINPDTAASKLLG 483 (697)
T ss_pred HHHHHHCCC-CCCEEEEEEEEEEECCCCCCCCEEEEEECCCCEECCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 999983889-7664899999999708873220456761344120421204655555420001222336677741001101
Q ss_pred ----------CCCCCEEEEECCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCCC-----C--
Q ss_conf ----------65430334203774143110237735975898422389875946757524730000013677-----6--
Q gi|254780727|r 241 ----------EGGDFSVKGVLDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSST-----G-- 303 (474)
Q Consensus 241 ----------~~~~~~~~~~~~~~~~~~~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~~-----~-- 303 (474)
T Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Al~~~~~~NvLSTP~~lTlDN~eA~I~VGQ~VPv~tg~~~~Gt~~~~~~ 563 (697)
T TIGR02517 484 SAGIGLLVTSSSTTSGVGGTGGIPNLGVLLNALKQDTGFNVLSTPSLLTLDNEEAEINVGQEVPVLTGSYNTGTGTGGTN 563 (697)
T ss_pred HEECCCCCCEEEEEEEEEECCCCCEEEEEEEEECCCCCCCEEECCEEEEECCCEEEEEECCCCCCCCCEEEEEEEEECCC
T ss_conf 10016650101212322100356234578875302657116877806763032146751767222365021155630545
Q ss_pred ---CEEEEEEEEEEEEEEEEEEE-CCCEEEEEEEEEECCCC----CCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEE
Q ss_conf ---20468988758999998981-59849998612320344----55556653216789999999985899899997665
Q gi|254780727|r 304 ---ATSVTTHDYGVVLHFTPTVL-SPGRIGLRIQTEVSEPV----IGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLK 375 (474)
Q Consensus 304 ---~~~v~~~~~Gi~L~vtP~V~-~~g~I~L~i~~evS~~~----~~~~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~ 375 (474)
T Consensus 564 ~n~f~t~~r~~vG~~L~v~PqIn~eg~~v~L~I~Qevs~~~~~~~~~~~~~~~~~~nkR~i~t~v~V~dg~tvVLGGLi~ 643 (697)
T TIGR02517 564 ANPFNTVERKDVGIKLKVTPQINGEGGTVRLEIYQEVSSVAPATGTVASAATGPTFNKREIKTSVLVDDGDTVVLGGLIQ 643 (697)
T ss_pred CCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEECCCCCCCEEECCCCCCCEEEEEEEEEEEECCCCEEEEEEEEC
T ss_conf 53143016887228998887783799869999986341333546412024577411114898899962798899866413
Q ss_pred EEECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEEEEECEECCC
Q ss_conf 3101321257112017612000165645521159999990515034
Q gi|254780727|r 376 DDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421 (474)
Q Consensus 376 ~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP~iV~p 421 (474)
T Consensus 644 d~~~~~~~kvPlLGDIP~lG~LFr~~~~~~~KTNLmVFitP~Iir~ 689 (697)
T TIGR02517 644 DKTSESVTKVPLLGDIPVLGRLFRSTTKERTKTNLMVFITPRIIRD 689 (697)
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCEEEEEEECCEEECC
T ss_conf 7510110134345785611011576673233316899960778779