HHsearch alignment for GI: 254780727 and conserved domain: TIGR02520

>TIGR02520 pilus_B_mal_scr type IVB pilus formation outer membrane protein, R64 PilN family; InterPro: IPR013359 Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. Proteins in this entry appear to be secretins for pilus formation, although they are quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Some proteins may be examples of bundle-forming pilus B (bfpB)..
Probab=100.00  E-value=1.5e-32  Score=206.82  Aligned_cols=295  Identities=17%  Similarity=0.220  Sum_probs=214.9

Q ss_pred             CCCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHC---CCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf             2672279999889997789998730454147899999857---8771699983894999997199999999999999861
Q gi|254780727|r   92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI---ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL  168 (474)
Q Consensus        92 k~~G~T~l~v~~~~g~~~~~~~v~v~~d~~~l~~~l~~~~---p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~ia~~~~  168 (474)
T Consensus       215 ~GsGttGltans-tq~tav~~~~sv---~~di~~~v~aMlS~~P~G~~~lS~sTG~L~VtD~---P~VL~Rv----~~Y~  283 (536)
T TIGR02520       215 AGSGTTGLTANS-TQSTAVKLKSSV---LNDIQKSVKAMLSSSPEGSLVLSRSTGSLAVTDS---PEVLDRV----ASYI  283 (536)
T ss_pred             CCCCCCCCCCCC-CCEEEEEEEHHH---HHHHHHHHEEEECCCCCCCEEEECCCEEEEEEEC---CCHHHHH----HHHH
T ss_conf             777534521146-640578750134---5433110201204699840687605406899406---6468899----9999


Q ss_pred             CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEECHHHHHCCCEEEECCCCCC--CCCCCCCCCCCCCCCCCCCCE
Q ss_conf             223455555665443035543277722799999999850014422612100145433--644354556666666654303
Q gi|254780727|r  169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFS  246 (474)
Q Consensus       169 ~~~~~~~~~~~~~~~vvn~l~v~~~~QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  246 (474)
T Consensus       284 -----------------~~~N~~l~rqV~LnV~v~~v~~~~~dq~~vdW~~vYK~~~~r~GLs~~n~~~g~s~~~~a~~s  346 (536)
T TIGR02520       284 -----------------DSQNRRLTRQVLLNVKVLSVSFKDSDQYGVDWSLVYKSLSRRIGLSLANKVAGTSTAATAGSS  346 (536)
T ss_pred             -----------------HHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECEECCCCCCCCCCCCCCCCCCEE
T ss_conf             -----------------850501130489889999988447764030004476654021134215766774100455406


Q ss_pred             EEEE---CCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCCCCCE------EEE--EEEEEEE
Q ss_conf             3420---3774143110237735975898422389875946757524730000013677620------468--9887589
Q gi|254780727|r  247 VKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT--THDYGVV  315 (474)
Q Consensus       247 ~~~~---~~~~~~~~~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~~~~~------~v~--~~~~Gi~  315 (474)
T Consensus       347 a~i~~~~s~F~Gs~~li~ALs~QG~vs~v~~~svTTlNlqp~P~QvA~q~~YlaS~stt~t~~vGsst~l~Pa~vTtGfn  426 (536)
T TIGR02520       347 AAIDVVKSPFAGSTLLIRALSEQGKVSVVTSPSVTTLNLQPVPVQVATQTGYLASVSTTSTANVGSSTSLEPATVTTGFN  426 (536)
T ss_pred             EEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECCEEEEEEEEECCCCCCCCCEEECCCCEECCCCH
T ss_conf             67744668615327999998407918674146644004776556886736999864111267744101034870345620


Q ss_pred             EEEEEEEECCCEEEEEEEEEECCCC------CCCC-----CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCC
Q ss_conf             9999898159849998612320344------5555-----6653216789999999985899899997665310132125
Q gi|254780727|r  316 LHFTPTVLSPGRIGLRIQTEVSEPV------IGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG  384 (474)
Q Consensus       316 L~vtP~V~~~g~I~L~i~~evS~~~------~~~~-----~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~  384 (474)
T Consensus       427 M~LLP~i~d~~~ilLqf~~s~S~~~~L~~~~s~~~~sGl~~vq~p~~d~r~~~~kV~LksG~TLv~sGye~~~~~~d~~G  506 (536)
T TIGR02520       427 MTLLPKILDDGDILLQFSISLSDLAELKKFTSKEGGSGLAKVQTPDVDLRNFSQKVALKSGETLVLSGYEERNDTADREG  506 (536)
T ss_pred             HHHHHHHHCCCCEEEEEEECCCCHHHHHEECCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf             12123663288466876405688447310024567853158741760077553341168897668813257775644244


Q ss_pred             CCCEECCCCEEECCCCCCCCCCEEEEEEEEECEE
Q ss_conf             7112017612000165645521159999990515
Q gi|254780727|r  385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFL  418 (474)
Q Consensus       385 vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP~i  418 (474)
T Consensus       507 ~-G~p~~~~---lGGs~~~~~~~~~lvvlvTPv~  536 (536)
T TIGR02520       507 V-GDPDVIV---LGGSRESERDHEVLVVLVTPVV  536 (536)
T ss_pred             C-CCCCEEE---ECCCCCCCCCCCEEEEEECCCC
T ss_conf             7-7722256---3476446556607999866889