HHsearch alignment for GI: 254780727 and conserved domain: TIGR02520
>TIGR02520 pilus_B_mal_scr type IVB pilus formation outer membrane protein, R64 PilN family; InterPro: IPR013359 Several related protein families encode outer membrane pore proteins for type II secretion, type III secretion, and type IV pilus formation. Proteins in this entry appear to be secretins for pilus formation, although they are quite different from PilQ. Members include the PilN lipoprotein of the plasmid R64 thin pilus, a type IV pilus. Some proteins may be examples of bundle-forming pilus B (bfpB)..
Probab=100.00 E-value=1.5e-32 Score=206.82 Aligned_cols=295 Identities=17% Similarity=0.220 Sum_probs=214.9
Q ss_pred CCCCEEEEEEECCCCCEEEEEEEECCCCHHHHHHHHHHHC---CCCCEEEEEECCEEEEEEEECCHHHHHHHHHHHHHHH
Q ss_conf 2672279999889997789998730454147899999857---8771699983894999997199999999999999861
Q gi|254780727|r 92 KNVGQANVILIGHDGKQMLNLDILIERDIAHLEMTLRRFI---ADSNIRVEMVSDTVVLHGMVRTIQDSQRAVELSETFL 168 (474)
Q Consensus 92 k~~G~T~l~v~~~~g~~~~~~~v~v~~d~~~l~~~l~~~~---p~~~i~v~~~~~~vvl~G~v~~~~~~~~~~~ia~~~~ 168 (474)
T Consensus 215 ~GsGttGltans-tq~tav~~~~sv---~~di~~~v~aMlS~~P~G~~~lS~sTG~L~VtD~---P~VL~Rv----~~Y~ 283 (536)
T TIGR02520 215 AGSGTTGLTANS-TQSTAVKLKSSV---LNDIQKSVKAMLSSSPEGSLVLSRSTGSLAVTDS---PEVLDRV----ASYI 283 (536)
T ss_pred CCCCCCCCCCCC-CCEEEEEEEHHH---HHHHHHHHEEEECCCCCCCEEEECCCEEEEEEEC---CCHHHHH----HHHH
T ss_conf 777534521146-640578750134---5433110201204699840687605406899406---6468899----9999
Q ss_pred CCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEEEEEECHHHHHCCCEEEECCCCCC--CCCCCCCCCCCCCCCCCCCCE
Q ss_conf 223455555665443035543277722799999999850014422612100145433--644354556666666654303
Q gi|254780727|r 169 SQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITGSSSG--PSKSFAADFGGKFVSEGGDFS 246 (474)
Q Consensus 169 ~~~~~~~~~~~~~~~vvn~l~v~~~~QV~lev~i~EVs~~~~~~lGi~w~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 246 (474)
T Consensus 284 -----------------~~~N~~l~rqV~LnV~v~~v~~~~~dq~~vdW~~vYK~~~~r~GLs~~n~~~g~s~~~~a~~s 346 (536)
T TIGR02520 284 -----------------DSQNRRLTRQVLLNVKVLSVSFKDSDQYGVDWSLVYKSLSRRIGLSLANKVAGTSTAATAGSS 346 (536)
T ss_pred -----------------HHHCCCCCCEEEEEEEEEEEEECCCCCCEEEEEEEEEEEECEECCCCCCCCCCCCCCCCCCEE
T ss_conf -----------------850501130489889999988447764030004476654021134215766774100455406
Q ss_pred EEEE---CCCCCHHHHHHHHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCCCCCE------EEE--EEEEEEE
Q ss_conf 3420---3774143110237735975898422389875946757524730000013677620------468--9887589
Q gi|254780727|r 247 VKGV---LDRFSFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT------SVT--THDYGVV 315 (474)
Q Consensus 247 ~~~~---~~~~~~~~~l~aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~~~~~------~v~--~~~~Gi~ 315 (474)
T Consensus 347 a~i~~~~s~F~Gs~~li~ALs~QG~vs~v~~~svTTlNlqp~P~QvA~q~~YlaS~stt~t~~vGsst~l~Pa~vTtGfn 426 (536)
T TIGR02520 347 AAIDVVKSPFAGSTLLIRALSEQGKVSVVTSPSVTTLNLQPVPVQVATQTGYLASVSTTSTANVGSSTSLEPATVTTGFN 426 (536)
T ss_pred EEEECCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCEEECCEEEEEEEEECCCCCCCCCEEECCCCEECCCCH
T ss_conf 67744668615327999998407918674146644004776556886736999864111267744101034870345620
Q ss_pred EEEEEEEECCCEEEEEEEEEECCCC------CCCC-----CCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCC
Q ss_conf 9999898159849998612320344------5555-----6653216789999999985899899997665310132125
Q gi|254780727|r 316 LHFTPTVLSPGRIGLRIQTEVSEPV------IGVN-----AGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEG 384 (474)
Q Consensus 316 L~vtP~V~~~g~I~L~i~~evS~~~------~~~~-----~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~ 384 (474)
T Consensus 427 M~LLP~i~d~~~ilLqf~~s~S~~~~L~~~~s~~~~sGl~~vq~p~~d~r~~~~kV~LksG~TLv~sGye~~~~~~d~~G 506 (536)
T TIGR02520 427 MTLLPKILDDGDILLQFSISLSDLAELKKFTSKEGGSGLAKVQTPDVDLRNFSQKVALKSGETLVLSGYEERNDTADREG 506 (536)
T ss_pred HHHHHHHHCCCCEEEEEEECCCCHHHHHEECCCCCCCCEEEEECCCCHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 12123663288466876405688447310024567853158741760077553341168897668813257775644244
Q ss_pred CCCEECCCCEEECCCCCCCCCCEEEEEEEEECEE
Q ss_conf 7112017612000165645521159999990515
Q gi|254780727|r 385 IPLLSKIPILGALFRNSRFNREETEIFIAATPFL 418 (474)
Q Consensus 385 vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP~i 418 (474)
T Consensus 507 ~-G~p~~~~---lGGs~~~~~~~~~lvvlvTPv~ 536 (536)
T TIGR02520 507 V-GDPDVIV---LGGSRESERDHEVLVVLVTPVV 536 (536)
T ss_pred C-CCCCEEE---ECCCCCCCCCCCEEEEEECCCC
T ss_conf 7-7722256---3476446556607999866889