HHsearch alignment for GI: 254780727 and conserved domain: pfam00263
>pfam00263 Secretin Bacterial type II and III secretion system protein.
Probab=100.00 E-value=1.4e-45 Score=281.86 Aligned_cols=159 Identities=36% Similarity=0.557 Sum_probs=146.8
Q ss_pred HHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCC---CCCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEECC
Q ss_conf 3773597589842238987594675752473000001367---7620468988758999998981598499986123203
Q gi|254780727|r 262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE 338 (474)
Q Consensus 262 aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~---~~~~~v~~~~~Gi~L~vtP~V~~~g~I~L~i~~evS~ 338 (474)
T Consensus 1 AL~~~g~~~ils~P~i~t~~g~~a~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~VtP~I~~~~~V~L~i~~~~s~ 80 (164)
T pfam00263 1 ALEQNGNAKVLSSPSLLTLNNQEASILVGQEVPYPTSSTSGNGTTTVEIKYIDAGLSLEVTPRVTDDGTITLEINPEVSS 80 (164)
T ss_pred CCCCCCCCEEEECCEEEEECCCEEEEECCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEE
T ss_conf 94305981899789899989999999973499968998528872888999999879999999994499799999999810
Q ss_pred CCCCC--CCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEEEEEC
Q ss_conf 44555--5665321678999999998589989999766531013212571120176120001656455211599999905
Q gi|254780727|r 339 PVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP 416 (474)
Q Consensus 339 ~~~~~--~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP 416 (474)
T Consensus 81 ~~~~~~~~~~~~P~~~~r~~~t~v~l~~Get~vlgGl~~~~~~~~~~gvP~L~~iP~lG~lF~~~~~~~~~~el~i~ItP 160 (164)
T pfam00263 81 LDGSNAVTGGGVPTINTREVTTTVRVRDGQTLVLGGLIQEEDSESVSKVPLLGDIPLLGALFRSTSKSKEKTELLIFITP 160 (164)
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEE
T ss_conf 23321245677863898999999999799799996288983610314361574061104541886573537999999995
Q ss_pred EECC
Q ss_conf 1503
Q gi|254780727|r 417 FLVK 420 (474)
Q Consensus 417 ~iV~ 420 (474)
T Consensus 161 ~ii~ 164 (164)
T pfam00263 161 RIVR 164 (164)
T ss_pred EECC
T ss_conf 9919