HHsearch alignment for GI: 254780727 and conserved domain: pfam00263

>pfam00263 Secretin Bacterial type II and III secretion system protein.
Probab=100.00  E-value=1.4e-45  Score=281.86  Aligned_cols=159  Identities=36%  Similarity=0.557  Sum_probs=146.8

Q ss_pred             HHHHCCCEEEEECCEEEEECCCEEEEEECCCEEEEECCCC---CCCEEEEEEEEEEEEEEEEEEECCCEEEEEEEEEECC
Q ss_conf             3773597589842238987594675752473000001367---7620468988758999998981598499986123203
Q gi|254780727|r  262 ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSS---TGATSVTTHDYGVVLHFTPTVLSPGRIGLRIQTEVSE  338 (474)
Q Consensus       262 aL~~~g~a~iLa~P~l~t~sgq~A~~~~G~e~pi~~~~~~---~~~~~v~~~~~Gi~L~vtP~V~~~g~I~L~i~~evS~  338 (474)
T Consensus         1 AL~~~g~~~ils~P~i~t~~g~~a~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~G~~L~VtP~I~~~~~V~L~i~~~~s~   80 (164)
T pfam00263         1 ALEQNGNAKVLSSPSLLTLNNQEASILVGQEVPYPTSSTSGNGTTTVEIKYIDAGLSLEVTPRVTDDGTITLEINPEVSS   80 (164)
T ss_pred             CCCCCCCCEEEECCEEEEECCCEEEEECCEEEEEEEEEECCCCEEEEEEEEEEEEEEEEEEEEECCCCEEEEEEEEEEEE
T ss_conf             94305981899789899989999999973499968998528872888999999879999999994499799999999810


Q ss_pred             CCCCC--CCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEECCCCCCCCCEECCCCEEECCCCCCCCCCEEEEEEEEEC
Q ss_conf             44555--5665321678999999998589989999766531013212571120176120001656455211599999905
Q gi|254780727|r  339 PVIGV--NAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATP  416 (474)
Q Consensus       339 ~~~~~--~~~~~P~i~~R~~~T~V~l~~Get~vIgGL~~~~~~~~~~~vP~LgdIPilG~LF~s~~~~~~~tELvI~iTP  416 (474)
T Consensus        81 ~~~~~~~~~~~~P~~~~r~~~t~v~l~~Get~vlgGl~~~~~~~~~~gvP~L~~iP~lG~lF~~~~~~~~~~el~i~ItP  160 (164)
T pfam00263        81 LDGSNAVTGGGVPTINTREVTTTVRVRDGQTLVLGGLIQEEDSESVSKVPLLGDIPLLGALFRSTSKSKEKTELLIFITP  160 (164)
T ss_pred             CCCCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEEEEEEEEEEEECCCCCCCCCCHHHHCCCCCCCCCEEEEEEEEEE
T ss_conf             23321245677863898999999999799799996288983610314361574061104541886573537999999995


Q ss_pred             EECC
Q ss_conf             1503
Q gi|254780727|r  417 FLVK  420 (474)
Q Consensus       417 ~iV~  420 (474)
T Consensus       161 ~ii~  164 (164)
T pfam00263       161 RIVR  164 (164)
T ss_pred             EECC
T ss_conf             9919