RPSBLAST alignment for GI: 254780727 and conserved domain: TIGR02516
>gnl|CDD|162899 TIGR02516, type_III_yscC, type III secretion outer membrane pore, YscC/HrcC family. A number of proteins homologous to the type IV pilus secretin PilQ (TIGR02515) are involved in type IV pilus formation, competence for transformation, type III secretion, and type II secretion (also called the main terminal branch of the general secretion pathway). The clade described by this model contains the outer membrane pore proteins of bacterial type III secretion systems, typified by YscC for animal pathogens and HrcC for plant pathogens. Length = 462
Score = 67.8 bits (166), Expect = 5e-12
Identities = 51/235 (21%), Positives = 91/235 (38%), Gaps = 15/235 (6%)
Query: 195 QVTLKVTIAEVRRDILKQIGFQHSITGSSSGPSKSFAADFGGKFVSEGGDFSVKGVLDRF 254
+ + I ++ L Q+G T + F G S D
Sbjct: 235 LIEISAWIIDIDASDLSQLGVDWQATLGAGDRQTGFNV---SAGAGLGATGSSIVTSDGD 291
Query: 255 SFETVLHALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGAT--SVTTHDY 312
F ++ALE+ + ++ P++ + A + + Y VS A SVT
Sbjct: 292 YFMARVNALEQTGKAKIVSRPSVLTLENVQAVLDNN-RTFYVKVSGERVADLESVT---A 347
Query: 313 GVVLHFTPTVLSPGRIGLRIQTEVS-----EPVIGVNAGD-MPSYRVRKADTTVELPSGG 366
G L TP V+ +I+ V + G + D +P + + +T + G
Sbjct: 348 GTSLRVTPRVIGDEGAQRQIKLNVDIEDGQQKTDGTSTVDALPEIKRTEINTQARVGHGQ 407
Query: 367 TIVLAGLLKDDIQQLKEGIPLLSKIPILGALFRNSRFNREETEIFIAATPFLVKP 421
++++ G +D+ +GIPLL IP+LG LFR++ + TP +V+
Sbjct: 408 SLLIGGYYRDESADSVDGIPLLGDIPLLGNLFRSTSKEKSRVVRLFLITPKIVRD 462