RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly
protein [Candidatus Liberibacter asiaticus str. psy62]
         (474 letters)



>1b35_D CRPV, protein (cricket paralysis virus, VP4); insect
           picorna-like virus, icosahedral virus; 2.40A {Cricket
           paralysis virus} (D:)
          Length = 57

 Score = 27.8 bits (61), Expect = 3.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)

Query: 378 IQQLKEGIPLLSKIPILGALF 398
           + Q+ EG+  LS IP+LG +F
Sbjct: 18  LGQISEGLTTLSHIPVLGNIF 38


>3dy5_A Allene oxide synthase-lipoxygenase protein; fusion protein,
           BI-functional enzyme, calcium, cytoplasm, dioxygenase,
           fatty acid biosynthesis; HET: HEM; 3.51A {Plexaura
           homomalla} (A:494-583,A:761-1066)
          Length = 396

 Score = 27.7 bits (61), Expect = 3.1
 Identities = 6/53 (11%), Positives = 15/53 (28%), Gaps = 10/53 (18%)

Query: 232 ADFGGKFVSEGGDFSVKGVLDRFS-------FETVLHALERATAI---RTLAE 274
             +     +   +  +  +   F        +  + H    + A+   R LA 
Sbjct: 56  RSYQESRKAALVNLGIGSLFTMFENWDSYDDYHILTHLTTESFALSTWRNLAS 108


>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-;
           fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
           reductase, beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (A:1221-1330,A:1541-1688)
          Length = 258

 Score = 27.5 bits (61), Expect = 3.3
 Identities = 14/77 (18%), Positives = 21/77 (27%), Gaps = 15/77 (19%)

Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYS--VEDDAKAFFFNRVN 449
           P L   +R  +    E +I         K     +L            +D   F   R  
Sbjct: 22  PNLNMKYRKRQLVTREAQI---------KDWVENELEALKLEAEEIPSEDQNEFLLERTR 72

Query: 450 KIYGPKEAS--EVEGQN 464
           +I+   EA       Q 
Sbjct: 73  EIH--NEAESQLRAAQQ 87


>2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM
           barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482}
           PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* (A:1-309)
          Length = 309

 Score = 27.6 bits (61), Expect = 3.6
 Identities = 15/92 (16%), Positives = 28/92 (30%), Gaps = 10/92 (10%)

Query: 321 TVLSP-GRIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQ 379
            + SP   + +  Q         V++   P+Y +   +  V  PS   + L         
Sbjct: 24  KLTSPDNNLVMTFQ---------VDSKGAPTYELTYKNKVVIKPSTLGLELKKEDNTRTD 74

Query: 380 QLKEGIPLLSKIPILGALFRNSRFNREETEIF 411
                   L+K+     L+        +T  F
Sbjct: 75  FDWVDRRDLTKLDSKTNLYDGFEVKDTQTATF 106


>3a24_A Alpha-galactosidase; glycoside hydrolase family 97,
           retaining glycosidase; HET: MES; 2.30A {Bacteroides
           thetaiotaomicron} (A:1-270)
          Length = 270

 Score = 26.4 bits (58), Expect = 7.5
 Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 4/36 (11%)

Query: 333 QTEVSEP----VIGVNAGDMPSYRVRKADTTVELPS 364
           +     P       +  GD  +Y +      +  PS
Sbjct: 1   RHMELSPDGNLKTTITIGDRLTYDITCNGRQILTPS 36


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae} (B:144-317,B:429-553)
          Length = 299

 Score = 26.6 bits (58), Expect = 7.8
 Identities = 16/130 (12%), Positives = 32/130 (24%), Gaps = 16/130 (12%)

Query: 254 FSFETVLH-ALERATAIRTLAEPTLTAISGQSASFTSGGQHLYKTVSSSTGATSVTTHDY 312
            S+E+      +  T +  +      A    S         + K +  +  + +      
Sbjct: 144 DSWESFFVSVRKAITVLFFIGVRCYEAYPNTSHLLVPASDLINKDLVKNNVSFNAKDIQI 203

Query: 313 GVVLHFTPTVLSPGRIGLR---IQTEVSEPV---IGVNAGDMPSYRVRKADTTVELPSGG 366
            V   F  + L      +    +   +  PV                  A   ++   GG
Sbjct: 204 PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFK---------ATHILDFGPGG 254

Query: 367 TIVLAGLLKD 376
              L  L   
Sbjct: 255 ASGLGVLTHR 264


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.318    0.135    0.372 

Gapped
Lambda     K      H
   0.267   0.0578    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 3,323,958
Number of extensions: 147050
Number of successful extensions: 413
Number of sequences better than 10.0: 1
Number of HSP's gapped: 413
Number of HSP's successfully gapped: 14
Length of query: 474
Length of database: 4,956,049
Length adjustment: 92
Effective length of query: 382
Effective length of database: 1,845,989
Effective search space: 705167798
Effective search space used: 705167798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)