RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254780727|ref|YP_003065140.1| putative pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] (474 letters) >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 53.4 bits (128), Expect = 1e-07 Identities = 71/426 (16%), Positives = 123/426 (28%), Gaps = 169/426 (39%) Query: 148 HGMVRT-----IQDSQRAVELSETFLSQ--------SGRNQYANSSSKKVMNLLN-IAGE 193 HG + A +L E F + ++ + ++ V L ++ Sbjct: 13 HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPT-TPAELVGKFLGYVSSL 71 Query: 194 ---------DQVTLKVTIAEVRRDILKQ--IGFQHSITGSSSGPSKSFAADFGGKFVSEG 242 DQV L + + E L+ I H++ + + Sbjct: 72 VEPSKVGQFDQV-LNLCLTEFENCYLEGNDI---HALAAKLLQENDTTLV---------- 117 Query: 243 GDFSVKGVLDRFSFETVLHALERATAIRTLAEPTL--TAISGQS---ASFTSGGQ----- 292 K ++ + +R + L G + A F GGQ Sbjct: 118 ---KTKELI-KNYITAR-IMAKRP--FDKKSNSALFRAVGEGNAQLVAIF--GGQGNTDD 168 Query: 293 ------HLYKT--------VSSSTG------ATSVTTHDY---GV-VLHF------TPTV 322 LY+T + S T++ G+ +L + TP Sbjct: 169 YFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDK 228 Query: 323 ---LS-PGRIGLRIQTEVSEPVIGVNAGDMPSYRV--RKADTTVELP-------SGGT-- 367 LS P +S P+IGV + Y V + T P G T Sbjct: 229 DYLLSIP----------ISCPLIGV--IQLAHYVVTAKLLGFT---PGELRSYLKGATGH 273 Query: 368 ---IVLA-------------GLLKDDIQQL-------KEGIPLLSKIPILGALFRNSRFN 404 +V A ++ I L E P S +P ++ +S N Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTS-LP--PSILEDSLEN 330 Query: 405 REETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKIYGPKEA----SEV 460 E +P L ++ +L++ V+D + N+ N + P S V Sbjct: 331 NEGV-----PSPML----SISNLTQEQ----VQD-----YVNKTNS-HLPAGKQVEISLV 371 Query: 461 EG-QNY 465 G +N Sbjct: 372 NGAKNL 377 Score = 44.9 bits (106), Expect = 4e-05 Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 72/215 (33%) Query: 109 MLNL-DILIERDIAHLEMTLRRFIADSNIRVEMV-SDT--VV------LHGMVRTIQD-- 156 ML++ ++ E+ ++ T A + + +V VV L+G+ T++ Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAK 397 Query: 157 ------------SQRAVELSETFLSQSG--RNQYANSSSKKVMNLL-----NIAGEDQVT 197 S+R ++ S FL + + +S + L + +D Sbjct: 398 APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKD--- 454 Query: 198 LKV----T-----IAEVRRDILKQIGFQHSITGSSSGP-----SKSFAA----DFGGKFV 239 +++ T + + I ++I I P + F A DFG Sbjct: 455 IQIPVYDTFDGSDLRVLSGSISERI--VDCII---RLPVKWETTTQFKATHILDFG---- 505 Query: 240 SEGGDFSVKGVLDRFSFETVLHALERATAIRT-LA 273 GG S GVL H + T +R +A Sbjct: 506 -PGGA-SGLGVL--------THRNKDGTGVRVIVA 530 >1k3r_A Conserved protein MT0001; beta barrel, structural genomics, PSI, protein structure initiative; 2.30A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.10 c.116.1.2 Length = 268 Score = 30.2 bits (68), Expect = 1.00 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 19/113 (16%) Query: 3 YLQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEI---------GKGKKISIG 53 YL+R F +M V LPP++ + E KG + IG Sbjct: 69 YLRRKVFPIMRELKH-----VGILPPLRTPHHPTGKPVTGEYRQGLTVKRVKKGTLVDIG 123 Query: 54 LNKVIILQVPVDVQDV----LVSDPTKADVVVHSPRTMYLFGKNVGQANVILI 102 +K+ + + + V + +V + + P Y +G V L Sbjct: 124 ADKLALCREKLTVNRIMSFRVVRLGKEILIEPDEPEDRY-WGYEVLDTRRNLA 175 >2nvp_A Hypothetical protein; alpha beta protein, structural genomics, PSI-2, protein structure initiative; 2.20A {Clostridium perfringens} SCOP: a.102.1.8 Length = 435 Score = 30.1 bits (68), Expect = 1.1 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 10/57 (17%) Query: 357 DTTVELPSGGTIVLAG-----LLKDDIQQLKEGIPLLSKIP-----ILGALFRNSRF 403 DTTVE+ G V+ G L+D Q++ +P + + P G + R + Sbjct: 41 DTTVEVSEGDAFVITGDIPAMWLRDSTSQVEHYLPFVKEYPELKAIFTGLINRQVKC 97 >2p02_A S-adenosylmethionine synthetase isoform type-2; structural genomics, structural genomics consortium, SGC, transferase; HET: SAM; 1.21A {Homo sapiens} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1qm4_A 1o92_A* 1o93_A* 1o90_A* 1o9t_A 2obv_A* Length = 396 Score = 28.8 bits (64), Expect = 2.8 Identities = 11/36 (30%), Positives = 18/36 (50%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 ++ +AGE V +V R+ +K IG+ S G Sbjct: 64 GMILLAGEITSRAAVDYQKVVREAVKHIGYDDSSKG 99 >1b78_A Pyrophosphatase; structural genomics, hyperthermal protein; 2.20A {Methanococcus jannaschii} SCOP: c.51.4.1 PDB: 2mjp_A* Length = 193 Score = 28.3 bits (62), Expect = 4.0 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 5/41 (12%) Query: 4 LQRTFFTMMSIFLFSSNPSVAKLPPIKEANAAVINISDVEI 44 +QRT +M I+ + NP+ K+ KEAN + ++ DVEI Sbjct: 1 MQRTLGEIMKIYFATGNPN--KI---KEANIILKDLKDVEI 36 >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 Length = 224 Score = 28.0 bits (62), Expect = 4.6 Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 4/115 (3%) Query: 100 ILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRV--EMVSDTVVLHGMVRTIQD 156 ++ + +L L D L + ++ E+T R A IR+ D ++ G V T + Sbjct: 22 VIALDNADDILPLADTLAKNGLSVAEITFRSEAAADAIRLLRANRPDFLIAAGTVLTAEQ 81 Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILK 211 A F+ G N + +N G + E+ +K Sbjct: 82 VVLAKSSGADFVVTPGLNPKIVKLCQD-LNFPITPGVNNPMAIEIALEMGISAVK 135 >1b35_D CRPV, protein (cricket paralysis virus, VP4); insect picorna-like virus, icosahedral virus; 2.40A {Cricket paralysis virus} SCOP: b.121.4.1 Length = 57 Score = 28.1 bits (62), Expect = 4.8 Identities = 10/21 (47%), Positives = 15/21 (71%) Query: 378 IQQLKEGIPLLSKIPILGALF 398 + Q+ EG+ LS IP+LG +F Sbjct: 18 LGQISEGLTTLSHIPVLGNIF 38 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 27.7 bits (60), Expect = 5.4 Identities = 9/38 (23%), Positives = 14/38 (36%), Gaps = 14/38 (36%) Query: 107 KQMLNLDILIERDIAHLEMTLRRFIADS----NIRVEM 140 KQ L L+ +L+ + DS I+ M Sbjct: 19 KQALK----------KLQASLKLYADDSAPALAIKATM 46 >1jr2_A Uroporphyrinogen-III synthase; heme biosynthesis, HEAM biosynthesis, lyase; 1.84A {Homo sapiens} SCOP: c.113.1.1 Length = 286 Score = 27.5 bits (60), Expect = 6.2 Identities = 17/86 (19%), Positives = 32/86 (37%), Gaps = 11/86 (12%) Query: 157 SQRAVELSETFLSQSGRNQYANSSSKKVMNLLNIAGEDQVTLKVTIAEVRRDILKQIGFQ 216 S RAVE +E L Q+ + + S K+ N ++ + ++ +IG Sbjct: 84 SPRAVEAAELCLEQNNKTEVWERSLKEKWNAKSVY---------VVGNATASLVSKIGLD 134 Query: 217 HSITGSSSGPSKSFAADFGGKFVSEG 242 G + G ++ A + S Sbjct: 135 --TEGETCGNAEKLAEYICSRESSAL 158 >1iap_A Guanine nucleotide exchange factor P115rhogef; RGS, RGRGS, signaling protein; 1.90A {Homo sapiens} SCOP: a.91.1.1 Length = 211 Score = 27.4 bits (60), Expect = 6.5 Identities = 25/100 (25%), Positives = 47/100 (47%), Gaps = 8/100 (8%) Query: 54 LNKVIILQVPVDVQDVLVSDPTKADVVVHSPRTMYLFGKNVGQANVILIGHD-----GKQ 108 L K +L+VPV D T+AD++ S F + V Q+ + +G K+ Sbjct: 63 LEKTAVLRVPVPPNVAFELDRTRADLI--SEDVQRRFVQEVVQSQQVAVGRQLEDFRSKR 120 Query: 109 MLNLDILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLH 148 ++ + E+++A LE + R A R V++ +++H Sbjct: 121 LMGMTPW-EQELAQLEAWVGRDRASYEARERHVAERLLMH 159 >1lox_A 15-lipoxygenase, 15LOX; oxidoreductase, 15LO_depot2; HET: RS7; 2.40A {Oryctolagus cuniculus} SCOP: a.119.1.2 b.12.1.1 PDB: 2p0m_A* Length = 662 Score = 27.2 bits (60), Expect = 7.1 Identities = 25/129 (19%), Positives = 45/129 (34%), Gaps = 22/129 (17%) Query: 349 PSYRVRKADTTVELPSGGT--------IVLAGLLKDDIQQLK---------EGIPLLSKI 391 P YR D LP G + + ++++ + EG+ L Sbjct: 95 PCYRWVVGDGVQSLPVGTGCTTVGDPQGLFQKHREQELEERRKLYQWGSWKEGLILNVAG 154 Query: 392 PILGALFRNSRFNREETEIFIAATPFLVKPVAMRDLSRPDDHYSVEDDAKAFFFNRVNKI 451 L L + RF ++ F A+ + + +A+++ + DD FNR+ Sbjct: 155 SKLTDLPVDERFLEDKKIDFEASLAWGLAELALKNSLNILAPWKTLDD-----FNRIFWC 209 Query: 452 YGPKEASEV 460 K A V Sbjct: 210 GRSKLARRV 218 >2j58_A WZA, outer membrane lipoprotein WZA; membrane protein; 2.26A {Escherichia coli} PDB: 2w8i_A 2w8h_A* Length = 359 Score = 27.2 bits (59), Expect = 7.8 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%) Query: 322 VLSPG---RIGLRIQTEVSEPVIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDI 378 + G + + E++ P + V +D T+ P G + +AG + Sbjct: 66 RIGVGDVLMVTVWDHPELTTPAGQYRSASDTGNWVN-SDGTIFYPYIGKVQVAGKTVSQV 124 Query: 379 QQL 381 +Q Sbjct: 125 RQD 127 >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus HB8} PDB: 2yw4_A Length = 207 Score = 27.2 bits (60), Expect = 8.7 Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 100 ILIGHDGKQMLNL-DILIERDIAHLEMTLRRFIADSNIRVEMVSDTVVLHGMVRTIQDSQ 158 +L G+ +L L +L E + LE+TLR ++ S ++ G VR+ ++++ Sbjct: 18 LLTVRGGEDLLGLARVLEEEGVGALEITLRTEKGLEALKALRKSGLLLGAGTVRSPKEAE 77 Query: 159 RAVELSETFLSQSGRNQ 175 A+E FL G + Sbjct: 78 AALEAGAAFLVSPGLLE 94 >2d73_A Alpha-glucosidase SUSB; glycoside hydrolase family 97, TIM barrel; 1.60A {Bacteroides thetaiotaomicron vpi-5482} PDB: 2zq0_A* 2jke_A* 2jka_A* 2jkp_A* Length = 738 Score = 26.9 bits (59), Expect = 9.5 Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 6/83 (7%) Query: 333 QTEVSEP------VIGVNAGDMPSYRVRKADTTVELPSGGTIVLAGLLKDDIQQLKEGIP 386 Q +++ P V++ P+Y + + V PS + L Sbjct: 22 QQKLTSPDNNLVMTFQVDSKGAPTYELTYKNKVVIKPSTLGLELKKEDNTRTDFDWVDRR 81 Query: 387 LLSKIPILGALFRNSRFNREETE 409 L+K+ L+ +T Sbjct: 82 DLTKLDSKTNLYDGFEVKDTQTA 104 >1p7l_A S-adenosylmethionine synthetase; AMPPNP, SAM, transferase; HET: SAM ANP PPK; 2.50A {Escherichia coli} SCOP: d.130.1.1 d.130.1.1 d.130.1.1 PDB: 1fug_A 1mxb_A* 1mxc_A* 1mxa_A* 1rg9_A* 1xra_A 1xrb_A 1xrc_A Length = 383 Score = 27.1 bits (60), Expect = 9.7 Identities = 11/36 (30%), Positives = 21/36 (58%) Query: 186 NLLNIAGEDQVTLKVTIAEVRRDILKQIGFQHSITG 221 ++ + GE + V I E+ R+ +++IG+ HS G Sbjct: 48 GMVLVGGEITTSAWVDIEEITRNTVREIGYVHSDMG 83 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.318 0.135 0.372 Gapped Lambda K H 0.267 0.0593 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 3,805,001 Number of extensions: 176333 Number of successful extensions: 485 Number of sequences better than 10.0: 1 Number of HSP's gapped: 482 Number of HSP's successfully gapped: 20 Length of query: 474 Length of database: 5,693,230 Length adjustment: 96 Effective length of query: 378 Effective length of database: 3,365,806 Effective search space: 1272274668 Effective search space used: 1272274668 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 58 (26.4 bits)