HHsearch alignment for GI: 254780728 and conserved domain: COG1261

>COG1261 FlgA Flagellar basal body P-ring biosynthesis protein [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones].
Probab=98.39  E-value=2.3e-06  Score=55.86  Aligned_cols=64  Identities=17%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             EEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC
Q ss_conf             8999726368896627534131552513379200002112454000035044202278871255550014
Q gi|254780728|r   47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR  116 (263)
Q Consensus        47 ~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~  116 (263)
T Consensus        96 ~~~va~r~I~~Ge~i~a~dv~~~~~~~~~l~~~~~~d~------~~vvg~vskr~l~pg~~i~~~~lr~~  159 (220)
T COG1261          96 EVVVAARTIYRGEKISAADVKLKRGDLDALPPGYVLDP------DEVVGKVSKRTLLPGQPILASMLRQA  159 (220)
T ss_pred             EEEEEECCCCCCCCCCHHHHEEEECCCCCCCCCCCCCH------HHHHCHHHHCCCCCCCEECHHHHCCC
T ss_conf             39999323488773686571235402545798553898------99736775402589989558881461