HHsearch alignment for GI: 254780728 and conserved domain: COG3745
>COG3745 CpaB Flp pilus assembly protein CpaB [Intracellular trafficking and secretion].
Probab=100.00 E-value=0 Score=303.49 Aligned_cols=257 Identities=34% Similarity=0.492 Sum_probs=218.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHH
Q ss_conf 95367679999999999999999998345554433222336787048999726368896627534131552513379200
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGF 80 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a 80 (263)
T Consensus 1 M~~~rliil~~~~~~ag~ag~la~~~~~a~~v~~~a~~~~~~~~~~~VlVA~~~L~~G~~L~~d~l~~~~WP~~~vp~ga 80 (276)
T COG3745 1 MRPKRLIILIVALAAAGLAGVLAASIWLAPAVPATAEPVAPGKPTKPVLVAAVDLPVGQRLSADQLRWQPWPADSVPAGA 80 (276)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCCC
T ss_conf 98312899999999999999999986147765433334678886336899931455677325142046666666788431
Q ss_pred CCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCCCCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE-C
Q ss_conf 002112454000035044202278871255550014676300212798279999716010345621789889999950-6
Q gi|254780728|r 81 IDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNGGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR-S 159 (263)
Q Consensus 81 ~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~-~ 159 (263)
T Consensus 81 is~~~~pda~~~l~G~iv~~pi~~GEPVl~~Kl~~~g~~~LS~~L~~GkRAvai~V~~v~gvGGFVlPgDrVDVilt~~k 160 (276)
T COG3745 81 ISRENAPDALTGLAGRIVRVPIGAGEPVLPSKLSGPGTRTLSSVLPPGKRAVAIRVDEVVGVGGFVLPGDRVDVILTVRK 160 (276)
T ss_pred CCCCCCCCHHHHCCCCEEEECCCCCCCCCHHHHCCCCCCHHHHHCCCCCEEEEEEEEEEEECCCEECCCCEEEEEEEEEC
T ss_conf 03555541123226825862135898531765058886301443089962688997543100223258973789999742
Q ss_pred CCCCCC---EEEEEECCCEEEEEECCCCCC--CCCCCCCEEEEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 888762---214511597899961555666--667666169998589999999999862749999955554665564442
Q gi|254780728|r 160 LSERKP---TVTVVLSNIRVIAIDHNIDSD--ERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDS 234 (263)
Q Consensus 160 ~~~~~~---~~~~il~~v~Vlav~~~~~~~--~~~~~~~~vtL~v~p~qa~~l~~A~~~G~l~l~Lrs~~d~~~~~~~~~ 234 (263)
T Consensus 161 ~~~~~d~s~~ae~VL~~iRVLAvdQ~i~e~~dg~p~v~~taTLEvtp~~a~~l~lA~~~g~LsLALRs~~d~~~~~~~~~ 240 (276)
T COG3745 161 DDAGADSSKLAETVLPNIRVLAVDQTISEREDGSPVVGRTATLEVTPDQAEKLTLAQQMGTLSLALRSVADAQEPDTGAA 240 (276)
T ss_pred CCCCCCCCCHHHHHHCCCEEEEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHCCCEEEEEEEHHHCCCCCCCHHH
T ss_conf 76655543017877348679986413202567886343257875285787899997426706864110221468860331
Q ss_pred CCCCCCC-CCCEEEEEECC--EEEEC
Q ss_conf 0001367-77236998647--17614
Q gi|254780728|r 235 DVWDVQE-EGKEIQIIKAG--VIVNK 257 (263)
Q Consensus 235 ~~~~~~~-~~~~v~~~~~g--~~~~~ 257 (263)
T Consensus 241 ~~~~~g~~~~~~vq~~~~~~~~~~~~ 266 (276)
T COG3745 241 TGLLLGDPVAATVQLIKGGKPSAVKV 266 (276)
T ss_pred EEECCCCCCCHHHHHHHCCCCCCCCC
T ss_conf 10034885301223452587531000