HHsearch alignment for GI: 254780728 and conserved domain: PRK12786
>PRK12786 flgA flagellar basal body P-ring biosynthesis protein FlgA; Reviewed.
Probab=98.69 E-value=9.5e-08 Score=63.98 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=77.2
Q ss_pred CCCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCC---
Q ss_conf 78704899972636889662753413155251337920000211245400003504420227887125555001467---
Q gi|254780728|r 42 PAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--- 118 (263)
Q Consensus 42 ~~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~--- 118 (263)
T Consensus 188 a~~~v~VpVl~R~l~rGevI~~~Dv~~~r~~~~~~~~~~~~d~------~~liG~~~Rr~l~aG~pir~~dl~~p~lV~R 261 (338)
T PRK12786 188 AYETVEAPVLARAVGRGEVIKSSDVVWERRPKARVSGDDIASR------EDLVGMQARRALRAGQPLRGADLAKPDLVQR 261 (338)
T ss_pred EEEEEEEEEECCCCCCCCCCCHHHEEEEEEEHHHCCCCCCCCC------CCCCCEEEEEECCCCCCCCHHHCCCCCEEEC
T ss_conf 9998972567355699887246883899800544686545680------1042116865236999304673688757846
Q ss_pred C-CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf 6-300212798279999716010345621789889999950
Q gi|254780728|r 119 G-GLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 (263)
Q Consensus 119 ~-~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~ 158 (263)
T Consensus 262 G~~Vtl~~~~~g--l~lt~~G~Al--~~G~~Gd~I~V~Nl~ 298 (338)
T PRK12786 262 GQLVTLIYQTPG--IYLTARGKAL--EDGAEGDVVRVLNLQ 298 (338)
T ss_pred CCEEEEEEECCC--EEEEEEEEEC--CCCCCCCEEEEEECC
T ss_conf 998999991697--8999998762--577899979999889