HHsearch alignment for GI: 254780728 and conserved domain: TIGR03170
>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by pfam08666.
Probab=98.53 E-value=8.6e-08 Score=64.21 Aligned_cols=64 Identities=25% Similarity=0.368 Sum_probs=58.6
Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 9997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
T Consensus 1 V~Va~~~i~~G~~i~~~d~~~~~~~~~~~~~~~~~~~------~~liG~~~~r~i~~G~~i~~~~l~~~~ 64 (122)
T TIGR03170 1 VVVAKRALNRGEVISPEDLKLERGDLARLPGGVLTDP------DEVVGKVAKRPLRAGQPLRANMLRPPW 64 (122)
T ss_pred CEEECCCCCCCCCCCHHHEEEEEEEHHHCCCCCCCCH------HHHCCCEEEEEECCCCCCCHHHCCCCC
T ss_conf 9998954398899798994899972542787530797------794461677731899804887757661