HHsearch alignment for GI: 254780728 and conserved domain: TIGR03170

>TIGR03170 flgA_cterm flagella basal body P-ring formation protein FlgA. This model describes a conserved C-terminal region of the flagellar basal body P-ring formation protein FlgA. This sequence region contains a SAF domain, now described by pfam08666.
Probab=98.53  E-value=8.6e-08  Score=64.21  Aligned_cols=64  Identities=25%  Similarity=0.368  Sum_probs=58.6

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf             9997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG  117 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~  117 (263)
T Consensus         1 V~Va~~~i~~G~~i~~~d~~~~~~~~~~~~~~~~~~~------~~liG~~~~r~i~~G~~i~~~~l~~~~   64 (122)
T TIGR03170         1 VVVAKRALNRGEVISPEDLKLERGDLARLPGGVLTDP------DEVVGKVAKRPLRAGQPLRANMLRPPW   64 (122)
T ss_pred             CEEECCCCCCCCCCCHHHEEEEEEEHHHCCCCCCCCH------HHHCCCEEEEEECCCCCCCHHHCCCCC
T ss_conf             9998954398899798994899972542787530797------794461677731899804887757661