HHsearch alignment for GI: 254780728 and conserved domain: TIGR03177
>TIGR03177 pilus_cpaB Flp pilus assembly protein CpaB. Members of this protein family are the CpaB protein of Flp-type pilus assembly. Similar proteins include the FlgA protein of bacterial flagellum biosynthesis.
Probab=100.00 E-value=0 Score=321.56 Aligned_cols=239 Identities=35% Similarity=0.565 Sum_probs=201.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCC
Q ss_conf 99999999999999999834555443322233678704899972636889662753413155251337920000211245
Q gi|254780728|r 9 IVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPN 88 (263)
Q Consensus 9 l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~ 88 (263)
T Consensus 2 l~vAl~lg~~a~~l~~~~~~~~~~~~~---~~~~~~~v~VvVA~~di~~G~~l~~~~l~~~~~P~~~~p~ga~~~----- 73 (261)
T TIGR03177 2 LAIALVAGGLAALLARRWLSPQQPAAA---VAEKVPTVPVVVAARDLPAGTPITAEDLRWVSWPEASVPAGAFDD----- 73 (261)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCC---CCCCCCCEEEEEECCCCCCCCCCCHHHEEEEECCCCCCCCCCCCC-----
T ss_conf 689999999999995510556787666---546688424999856579888958899699977654489751159-----
Q ss_pred CCHHCCCCEEECCCCCCCCCCHHHCCCCCC-CCCEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCC----
Q ss_conf 400003504420227887125555001467-630021279827999971601034562178988999995068887----
Q gi|254780728|r 89 AMQELDGVLVRVPILKGDPIRLEKLVDRGN-GGLSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSER---- 163 (263)
Q Consensus 89 ~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~-~~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~---- 163 (263)
T Consensus 74 -~~~~~Gr~~~~~i~~Gepi~~~~l~~~g~~~~La~~l~pG~RAvti~Vd~~~gv~Gfi~PGD~VDVl~t~~~~~~~~~~ 152 (261)
T TIGR03177 74 -IAQLVGRIVRRPLEAGEPILESKLVPPGASGGLAALLPPGMRAVAIRVDEVTGVGGFILPGDRVDVLLTRRDDESRPND 152 (261)
T ss_pred -HHHHCCCEEEEEECCCCCCCHHHCCCCCCCCCHHHHCCCCCEEEEEEECCCCCCCCCCCCCCEEEEEEEECCCCCCCCC
T ss_conf -7786684054232689831386654688875456535899578999865433556646899978999985057887766
Q ss_pred CCEEEEEECCCEEEEEECCCCC--CCCCCCCCEEEEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCC----
Q ss_conf 6221451159789996155566--6667666169998589999999999862749999955554665564442000----
Q gi|254780728|r 164 KPTVTVVLSNIRVIAIDHNIDS--DERVLVGSTATLELTPMQAKALVAAQSVAKLSLVLRSIADLNPSSSEDSDVW---- 237 (263)
Q Consensus 164 ~~~~~~il~~v~Vlav~~~~~~--~~~~~~~~~vtL~v~p~qa~~l~~A~~~G~l~l~Lrs~~d~~~~~~~~~~~~---- 237 (263)
T Consensus 153 ~~~t~tiL~~v~VLAv~q~~~~~~~~~~~~~~tVTLevtp~qa~~L~lA~~~G~L~LaLR~~~D~~~~~~~~~~~~~~~~ 232 (261)
T TIGR03177 153 RATSETVLQNIRVLAVDQTAQEGEDTKPKVVRTVTLEVTPEQAEKLALARQVGTLSLALRNAADTDEAAATEVPAATLSL 232 (261)
T ss_pred CEEHHHHHHCCEEEEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCEECHHHHCC
T ss_conf 41212022286799953644566678886624899987999999999986268599995188767732200022444226
Q ss_pred --------CC-CCCCCEEEEEECCEEEE
Q ss_conf --------13-67772369986471761
Q gi|254780728|r 238 --------DV-QEEGKEIQIIKAGVIVN 256 (263)
Q Consensus 238 --------~~-~~~~~~v~~~~~g~~~~ 256 (263)
T Consensus 233 ~~~~~~~~~~~~~~~~~V~virG~~~~~ 260 (261)
T TIGR03177 233 APALAKAVDAAAPPRAGVEVIRGGQVSE 260 (261)
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCEEEE
T ss_conf 8655667777788775389988863774