Query gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 263
No_of_seqs 131 out of 616
Neff 7.7
Searched_HMMs 33803
Date Wed Jun 1 14:29:26 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780728.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3frn_A Flagellar protein FLGA 99.0 5.1E-10 1.5E-14 76.9 5.8 68 43-116 140-207 (207)
2 >1wvo_A Sialic acid synthase; 98.1 3.4E-06 9.9E-11 54.5 5.0 64 46-119 6-70 (79)
3 >1msi_A Type III antifreeze pr 98.0 4.9E-06 1.4E-10 53.5 4.4 61 47-117 4-65 (70)
4 >2wqp_A Polysialic acid capsul 98.0 7.2E-06 2.1E-10 52.5 4.8 58 46-113 14-72 (73)
5 >1ops_A Type III AFP, type III 98.0 9.9E-06 2.9E-10 51.7 4.8 58 48-115 3-61 (64)
6 >1ucs_A Antifreeze peptide RD1 97.9 9.4E-06 2.8E-10 51.8 4.2 59 48-115 4-62 (64)
7 >1c89_A RD3, antifreeze protei 97.8 9.2E-06 2.7E-10 51.9 2.7 62 45-115 7-68 (70)
8 >1c89_A RD3, antifreeze protei 97.8 8.9E-06 2.6E-10 52.0 2.5 59 48-115 4-62 (64)
9 >1vli_A Spore coat polysacchar 97.8 2.3E-05 6.7E-10 49.6 4.1 63 46-118 15-81 (85)
10 >3k3s_A Altronate hydrolase; s 92.2 0.11 3.3E-06 27.9 2.9 51 44-111 29-79 (105)
11 >3g8r_A Probable spore coat po 91.2 0.37 1.1E-05 24.8 4.7 61 49-117 3-63 (71)
12 >3laz_A D-galactarate dehydrat 78.8 0.96 2.9E-05 22.3 1.6 49 44-111 23-72 (99)
13 >2zjr_B 50S ribosomal protein 73.3 4.2 0.00012 18.6 3.7 37 123-159 12-48 (150)
14 >3h9i_A Cation efflux system p 64.7 7.7 0.00023 17.0 4.2 66 1-70 1-72 (186)
15 >1xvl_A Mn transporter, MNTC p 59.7 2.8 8.3E-05 19.6 0.5 55 1-55 1-55 (231)
16 >3bo5_A Histone-lysine N-methy 58.1 9 0.00027 16.6 2.9 16 94-109 92-107 (114)
17 >1ltl_A DNA replication initia 55.4 11 0.00033 16.1 3.7 48 123-170 47-96 (137)
18 >3f9v_A Minichromosome mainten 54.2 12 0.00035 15.9 3.7 37 124-160 92-128 (176)
19 >2vl6_A SSO MCM N-TER, minichr 50.6 12 0.00034 16.0 2.5 36 124-159 92-127 (157)
20 >1h3i_A Histone H3 lysine 4 sp 50.5 9 0.00027 16.6 1.9 24 46-69 27-50 (144)
21 >2f69_A Histone-lysine N-methy 49.3 9.7 0.00029 16.4 1.9 23 46-68 27-49 (142)
22 >1mvh_A Cryptic LOCI regulator 48.5 8.7 0.00026 16.7 1.6 18 46-63 30-47 (183)
23 >3ep0_A PR domain zinc finger 48.4 9.3 0.00027 16.5 1.7 24 46-69 40-63 (170)
24 >1n3j_A A612L, histone H3 lysi 46.8 12 0.00034 16.0 2.0 19 94-112 52-70 (84)
25 >3ihx_A PR domain zinc finger 45.5 16 0.00047 15.2 2.5 17 49-65 34-50 (152)
26 >3f9x_A Histone-lysine N-methy 45.1 11 0.00031 16.2 1.6 16 94-109 59-74 (78)
27 >3h6l_A Histone-lysine N-methy 43.2 12 0.00035 15.9 1.6 15 95-109 93-107 (113)
28 >2w5y_A Histone-lysine N-methy 42.6 14 0.00042 15.5 1.9 15 96-110 110-124 (151)
29 >3dal_A PR domain zinc finger 38.8 15 0.00045 15.3 1.6 20 45-64 70-89 (196)
30 >3db5_A PR domain zinc finger 38.7 15 0.00045 15.3 1.6 20 47-66 36-55 (151)
31 >3hna_A Histone-lysine N-methy 33.1 21 0.00062 14.4 1.6 12 145-156 166-177 (287)
32 >3cyy_A Tight junction protein 31.4 21 0.00063 14.4 1.3 33 120-152 16-48 (92)
33 >2zjr_R 50S ribosomal protein 28.6 30 0.0009 13.5 1.8 35 145-179 15-49 (87)
34 >2a3m_A COG3005: nitrate/TMAO 26.4 29 0.00087 13.6 1.4 11 1-11 1-11 (83)
35 >2hj1_A Hypothetical protein; 24.6 30 0.00089 13.5 1.1 20 142-161 70-89 (97)
36 >2ftc_C L3MT, MRP-L3, mitochon 23.4 38 0.0011 12.9 2.0 16 145-160 28-43 (137)
37 >1rz2_A Conserved hypothetical 22.5 25 0.00073 14.0 0.4 26 2-27 8-33 (254)
38 >2rcz_A Tight junction protein 22.3 32 0.00093 13.4 0.9 33 120-152 14-46 (81)
39 >1twy_A ABC transporter, perip 20.4 25 0.00073 14.0 0.0 22 1-22 1-22 (290)
No 1
>>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} (A:1-207)
Probab=99.01 E-value=5.1e-10 Score=76.94 Aligned_cols=68 Identities=21% Similarity=0.218 Sum_probs=62.8
Q ss_pred CCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC
Q ss_conf 87048999726368896627534131552513379200002112454000035044202278871255550014
Q gi|254780728|r 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 (263)
Q Consensus 43 ~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~ 116 (263)
..+.+|+|++|+|++|+.|+++|+++++++.+.++.+++++. ++++|+.++++|.+|++|+.++|..|
T Consensus 140 ~~~~~VvVa~r~l~rG~~I~~~Di~~~~~~~~~l~~~~~~d~------~~~vG~~~~r~l~~Gq~i~~~~l~~P 207 (207)
T 3frn_A 140 RKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFDV------SEVVGKISRRYLKEGTVLTADMVKDP 207 (207)
T ss_dssp ECEEEEEEESSCBCTTCBCCTTTEEEEEEEGGGCSSCBCSCH------HHHTTCEESSCBCTTCBCBGGGEECC
T ss_pred EEEEEEEEECCCCCCCCEECHHHHCCEEEECCCCCCCCCCCH------HHHCCEEECCCCCCCCCCCHHHCCCC
T ss_conf 996579999444299999677770123753156897542797------89589287035689994659983677
No 2
>>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} (A:)
Probab=98.13 E-value=3.4e-06 Score=54.47 Aligned_cols=64 Identities=22% Similarity=0.208 Sum_probs=52.7
Q ss_pred EEEEEECCCCCCCCEECHHHEEEEECCH-HHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCCC
Q ss_conf 4899972636889662753413155251-3379200002112454000035044202278871255550014676
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEWVAFPE-ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGNG 119 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~~~~p~-~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~~ 119 (263)
.+-+++++||++|+.|+++|+..+. |. .-+++..+ ++++|+.+.+++.+|++|+.++|...+..
T Consensus 6 RRSiva~~di~~G~ilt~~dl~~~R-Pg~~Gi~p~~~---------~~iiGk~~~r~i~~g~~l~~~di~~~~~~ 70 (79)
T 1wvo_A 6 SGSVVAKVKIPEGTILTMDMLTVKV-GEPKGYPPEDI---------FNLVGKKVLVTVEEDDTIMEELVDNHGKK 70 (79)
T ss_dssp CCEEEESSCBCTTCBCCGGGEEEET-TCCCSSCSSSH---------HHHTTCBBSSCBCTTCBCCGGGBCCCCCS
T ss_pred CEEEEECCCCCCCCEEHHHHCEEEC-CCCCCCCCCHH---------HHHCCCHHHHCCCCCCCCCHHHHHCCCCC
T ss_conf 6878989800898894076327851-89998693417---------88731077633089792599998614665
No 3
>>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} (A:)
Probab=98.04 E-value=4.9e-06 Score=53.51 Aligned_cols=61 Identities=8% Similarity=0.051 Sum_probs=51.1
Q ss_pred EEEEECCCCCCCCEECHHHEEEEECC-HHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 89997263688966275341315525-133792000021124540000350442022788712555500146
Q gi|254780728|r 47 NVLISKGDLAVGMVVTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 47 ~V~va~~di~~G~~It~~dl~~~~~p-~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
+-+||++||++|+.|+.+|+..+. | ...+|+..+ +++.|+.+.+++.+|++|+.++|..++
T Consensus 4 rSiva~~di~~G~~lt~~di~~kR-Pg~~Gi~p~~~---------~~viGk~~~rdi~~g~~i~~~dl~~~~ 65 (70)
T 1msi_A 4 ASVVANQLIPINTALTLVMMRSEV-VTPVGIPAEDI---------PRLVSMQVNRAVPLGTTLMPDMVKGYA 65 (70)
T ss_dssp CEEEESSCBCTTCBCCGGGEEEEC-CSSCCSBGGGH---------HHHTTCBBSSCBCTTCBCCGGGBTTCC
T ss_pred CCEEEEEEECCCCCCCHHHHEEEE-CCCCCCCHHHH---------HHHHHHHHHCCCCCCCCCCHHHHHHHH
T ss_conf 436875441687542275630343-17888898999---------898607762150689853088997531
No 4
>>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A (A:277-349)
Probab=98.01 E-value=7.2e-06 Score=52.51 Aligned_cols=58 Identities=17% Similarity=0.211 Sum_probs=48.8
Q ss_pred EEEEEECCCCCCCCEECHHHEEEEECCHHH-CCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC
Q ss_conf 489997263688966275341315525133-79200002112454000035044202278871255550
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~~~~p~~~-~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l 113 (263)
.+=++|++||++|+.||.+|+..+. |... +++..+ +++.|+.+.+++.+|++|+.++|
T Consensus 14 rrSiva~~di~~G~~it~~~l~~kR-Pg~Ggi~p~~~---------~~iiGk~~~r~i~~~~~i~~~dl 72 (73)
T 2wqp_A 14 FASVVADKDIKKGELLSGDNLWVKR-PGNGDFSVNEY---------ETLFGKVAACNIRKGAQIKKTDI 72 (73)
T ss_dssp SCEEEESSCBCTTCBCCTTTEEEES-CTTSSSBGGGG---------GGGTTCBBSSCBCTTCBCCGGGB
T ss_pred CEEEEEECCCCCCCEECHHHEEEEC-CCCCCCCHHHH---------HHHCCCEECCCCCCCCCCCHHHC
T ss_conf 5689995613889896589958988-97998499999---------98669078344589795897887
No 5
>>1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth inhibition, pretzel fold, glycoprotein; 2.00A {Macrozoarces americanus} (A:)
Probab=97.97 E-value=9.9e-06 Score=51.70 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=48.9
Q ss_pred EEEECCCCCCCCEECHHHEEEEECC-HHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 9997263688966275341315525-1337920000211245400003504420227887125555001
Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFP-EENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263)
Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p-~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263)
-+||++||++|+.||.+|+..++ | ..-+++..+ +++.|+.+.+++.+|++|..++|..
T Consensus 3 Siva~~dI~~Ge~it~~~l~~kR-Pg~~Gi~p~~~---------~~viGk~~~~di~~~~~i~~~di~~ 61 (64)
T 1ops_A 3 SVVATQLIPMNTALTPAMMEGKV-TNPIGIPFAEM---------SQLVGKQVNTPVAKGQTLMPNMVKT 61 (64)
T ss_dssp EEEESSCBCTTCBCCGGGEEEEC-CSSCCSBGGGG---------GGTTTCBBSSCBCTTCBCCGGGBTT
T ss_pred CEEECCCCCCCCCCCHHHCCEEC-CCCCCCCHHHH---------HHHHHHHHCCCCCCCCCCCHHHHHH
T ss_conf 66764436898892889912644-78998599999---------9986687615547979528999864
No 6
>>1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} (A:)
Probab=97.93 E-value=9.4e-06 Score=51.85 Aligned_cols=59 Identities=10% Similarity=0.127 Sum_probs=48.8
Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 99972636889662753413155251337920000211245400003504420227887125555001
Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263)
Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263)
=++|++||++|+.||.+|+..+.=....+++..+ ++++|+.+.+++.+|++|..++|-.
T Consensus 4 Siva~~di~~G~~lt~~~l~~~RPg~~Gi~p~~~---------~~viGk~~~rdi~~~~~i~~~di~~ 62 (64)
T 1ucs_A 4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAEEI---------PKLVGMQVNRAVPLGTTLMPDMVKN 62 (64)
T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGH---------HHHTTCBBSSCBCTTCBCCGGGBTT
T ss_pred CEEEEEEECCCCCCCHHHHHEEECCCCCCCHHHH---------HHHHHHHHHCCCCCCCCCCHHHHHC
T ss_conf 1587423078754227674123127888898999---------9987388710516898533766630
No 7
>>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:65-134)
Probab=97.83 E-value=9.2e-06 Score=51.89 Aligned_cols=62 Identities=8% Similarity=0.123 Sum_probs=50.7
Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 04899972636889662753413155251337920000211245400003504420227887125555001
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263)
..+-+||++||++|+.||.+|+..+.=....+++..+ +++.|+.+.+++.+|++|..++|..
T Consensus 7 ~rrSiva~~di~~G~~it~~~l~~kRPg~~Gi~p~~~---------~~iiGk~~~~~i~~~~~i~~~dle~ 68 (70)
T 1c89_A 7 GLKSVVANQLIPINTALTLVMMKAEEVSPKGIPSEEI---------SKLVGMQVNRAVYLDQTLMPDMVKN 68 (70)
T ss_dssp SSEEEEESSCBCSSCCBCTTTCEEEECSSCCCBSSSH---------HHHTTBCCSSCBCSSEECCTTTSCC
T ss_pred CCEEEEECCCCCCCCCCCHHHCCEEECCCCCCCHHHH---------HHHHCHHHHHCCCCCCCCCHHHHHC
T ss_conf 6266876564689888688891255279998798899---------9861956441338989118899720
No 8
>>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} (A:1-64)
Probab=97.82 E-value=8.9e-06 Score=51.98 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=48.5
Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf 99972636889662753413155251337920000211245400003504420227887125555001
Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263)
Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263)
=++|++||++|+.||.+|+..+.=...-+++.. .++++|+.+.+++.+|++|..++|-.
T Consensus 4 Siva~~di~~G~~it~~~l~~~RPg~~Gi~p~~---------~~~iiGk~~~~di~~~~~i~~~di~~ 62 (64)
T 1c89_A 4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAEE---------IPNLVGMQVNRAVPLGTTLMPDMVKN 62 (64)
T ss_dssp EEEESSCBCSSCCCCTTTEEEECCSSCCSBSTT---------HHHHTTCCCSSCBCTTEECCTTTCSS
T ss_pred CEEEEEECCCCCCCCHHHHEEEECCCCCCCHHH---------HHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 158731307776412536114532678888789---------88876267754222697010888988
No 9
>>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} (A:301-385)
Probab=97.79 E-value=2.3e-05 Score=49.60 Aligned_cols=63 Identities=13% Similarity=0.219 Sum_probs=49.8
Q ss_pred EEEEEECCCCCCCCEECHHHEEEEECCH---HHCCCHHCCCCCCCCCCHHC-CCCEEECCCCCCCCCCHHHCCCCCC
Q ss_conf 4899972636889662753413155251---33792000021124540000-3504420227887125555001467
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEWVAFPE---ENVFDGFIDDVHQPNAMQEL-DGVLVRVPILKGDPIRLEKLVDRGN 118 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~~~~p~---~~~p~~a~~~~~~~~~~~~~-~G~~~~~~i~~G~~i~~~~l~~~~~ 118 (263)
.+=+++++||++|+.||.+|+..++ |. .-+++..+ +++ .|+.+.+++.+|++|+.++|...+.
T Consensus 15 rrSiva~~di~kG~~lt~~~i~~kR-Pg~~~~Gi~p~~~---------~~vl~Gk~~~rdi~~g~~i~~~di~~~~~ 81 (85)
T 1vli_A 15 YRGIFTTAPIQKGEAFSEDNIAVLR-PGQKPQGLHPRFF---------ELLTSGVRAVRDIPADTGIVWDDILLKDS 81 (85)
T ss_dssp SCEEEESSCBCTTCBCCTTTEEEEC-CTTSCCCBCGGGH---------HHHHTTCBCSSCBCTTCBCCGGGTSCCC-
T ss_pred CEEEEECCCCCCCCEECHHHEEEEC-CCCCCCCCCHHHH---------HHHHCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf 3799990520889995589957878-7788888698999---------99767939916059989779999024478
No 10
>>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str} (A:)
Probab=92.18 E-value=0.11 Score=27.87 Aligned_cols=51 Identities=24% Similarity=0.195 Sum_probs=36.7
Q ss_pred CEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHH
Q ss_conf 70489997263688966275341315525133792000021124540000350442022788712555
Q gi|254780728|r 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 (263)
Q Consensus 44 ~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~ 111 (263)
+.=+|.||.+||++|+.++-++..+.-. +.+|.+. |++..+|.+|+.|.+.
T Consensus 29 ~~DNVaVAl~dl~~G~~v~~~~~~i~l~--~~Ip~GH---------------KiAl~di~~Ge~ViKY 79 (105)
T 3k3s_A 29 ALDNVAVALADLAEGTEVSVDNQTVTLR--QDVARGH---------------KFALTDIAKGANVIKY 79 (105)
T ss_dssp TTCSEEEESSCBCTTCEEEETTEEEECS--SCBCTTC---------------EEESSCBCTTCEEEET
T ss_pred CCCCEEEECCCCCCCCEEEECCEEEEEC--CCCCCCC---------------EEEHHHCCCCCEEEEC
T ss_conf 9998999677469999984589068988--5586547---------------2311002599983878
No 11
>>3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} (A:280-350)
Probab=91.16 E-value=0.37 Score=24.79 Aligned_cols=61 Identities=16% Similarity=0.248 Sum_probs=44.8
Q ss_pred EEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf 997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r 49 LISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263)
Q Consensus 49 ~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263)
+-++||+++|+.++++++....-|.. |-++.. .-+.+.-.+++.+|++..++...+|.+-.
T Consensus 3 vf~tr~v~a~~~lsad~v~fafppve----gq~tan----ewsky~r~~~~~~i~a~~pv~aadlepvn 63 (71)
T 3g8r_A 3 VFATRPVAAGEALTADNVSFAFPPVE----GQLTAN----EWSKYVRYTAKTPIAADAPVXAADLEPVN 63 (71)
T ss_dssp EEESSCBCTTCBCBTTBEEEEBCCCT----TBCBGG----GCCSSCCEEESSCBCTTCBCBGGGEEEC-
T ss_pred EEEECCCCCCCEECHHHEEEECCCCC----CCCCHH----HHHHHCCEEECCCCCCCCCCCHHHHHHHC
T ss_conf 99936238899933888258778998----997989----99986691582555896947989936541
No 12
>>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.92A {Escherichia coli} (A:)
Probab=78.76 E-value=0.96 Score=22.33 Aligned_cols=49 Identities=20% Similarity=0.072 Sum_probs=31.2
Q ss_pred CEEEEEEECCCCCCCCEECHHH-EEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHH
Q ss_conf 7048999726368896627534-1315525133792000021124540000350442022788712555
Q gi|254780728|r 44 KFINVLISKGDLAVGMVVTPNI-LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 (263)
Q Consensus 44 ~~v~V~va~~di~~G~~It~~d-l~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~ 111 (263)
+.=+|.++-+|+++|+.+.-++ ++.. +.+|.|. |++..+|.+|+.+.+.
T Consensus 23 ~~DNVaval~dl~~g~~v~~~~~v~~~----~~Ip~GH---------------KiAl~di~~G~~ViKY 72 (99)
T 3laz_A 23 DTDNVAIIVNDNGLKAGTRFPDGLELI----EHIPQGH---------------KVALLDIPANGEIIRY 72 (99)
T ss_dssp TTCSEEEEESTTCBCTTCBCTTSCBCS----SCBCTTC---------------EEESSCBCTTCEEEET
T ss_pred CCCCEEEEECCCCCCCCEEECCCEEEC----CCCCCCC---------------EEEECCCCCCCEEEEC
T ss_conf 999899971566889824845887988----7689999---------------8983465898987998
No 13
>>2zjr_B 50S ribosomal protein L3; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (B:1-29,B:91-211)
Probab=73.33 E-value=4.2 Score=18.57 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=28.1
Q ss_pred EECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 2127982799997160103456217898899999506
Q gi|254780728|r 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 (263)
Q Consensus 123 ~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~ 159 (263)
.++=.+.||+++.+-....-....++|++|||.....
T Consensus 12 ~~~~~~~~~~~~~~~~~~l~v~~F~~Gq~VDV~g~SK 48 (150)
T 2zjr_B 12 TQIWKNDRAIPVTVVLAGVNVDIFAEGEKIDATGTSK 48 (150)
T ss_dssp EEEEETTEEEEEEEEECCCSTTTSCTTCEEEEEEECC
T ss_pred EEEEECCCEEEEEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf 0488699989989999571333002898899999860
No 14
>>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B (A:1-101,A:323-407)
Probab=64.73 E-value=7.7 Score=17.04 Aligned_cols=66 Identities=14% Similarity=-0.080 Sum_probs=27.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEE------CCCCCCCCEECHHHEEEEE
Q ss_conf 953676799999999999999999983455544332223367870489997------2636889662753413155
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLIS------KGDLAVGMVVTPNILEWVA 70 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va------~~di~~G~~It~~dl~~~~ 70 (263)
||+..++++++.+++ ++++....|.......... .....+...+|.- .+|-|--.+|=.=||..+.
T Consensus 1 Mk~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~y~cPMhP~i~~~~PG~cPicGMdLvp~~ 72 (186)
T 3h9i_A 1 MKKIALIIGSMIAGG--IISAAGFTWVAKAEPPAEK--TSTAERKILFWYDPMYPNTRFDKPGKSPFMDMDLVPKY 72 (186)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHH--HHHHHHHHHCCCCCCCCCC--CCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 951499999999999--9999876420467887544--56677621587289998767999998987898433530
No 15
>>1xvl_A Mn transporter, MNTC protein; manganese, ABC-type transport systems, photosynthesis, cyanobacteria, disulfide bond, metal transport; 2.90A {Synechocystis SP} (A:1-201,A:292-321)
Probab=59.74 E-value=2.8 Score=19.62 Aligned_cols=55 Identities=16% Similarity=0.051 Sum_probs=22.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCC
Q ss_conf 9536767999999999999999999834555443322233678704899972636
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGIIAMRLVSPHHVQTEEVITENPAKFINVLISKGDL 55 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~~~~~~~~~~~~~~~~~~~~~~~~v~V~va~~di 55 (263)
||+.+++.+.+.++.+..+........................++..|++...++
T Consensus 1 Mk~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~VvaT~~pl 55 (231)
T 1xvl_A 1 MTSTRLQKLRIRAPGCGTAEVTTSNAPSEEVTAVTTEVQGETEEKKKVLTTFTVL 55 (231)
T ss_dssp ---------------------------------------CCCCCCCEEEESSHHH
T ss_pred CCCHHHHHHEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECHHH
T ss_conf 9512234550214645789888877754345676656666778985899977599
No 16
>>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, alternative splicing, chromatin regulator, coiled coil, DNA damage, DNA repair, DNA-binding; HET: SAH; 1.59A {Homo sapiens} (A:89-155,A:207-253)
Probab=58.09 E-value=9 Score=16.61 Aligned_cols=16 Identities=6% Similarity=0.140 Sum_probs=7.5
Q ss_pred CCCEEECCCCCCCCCC
Q ss_conf 3504420227887125
Q gi|254780728|r 94 DGVLVRVPILKGDPIR 109 (263)
Q Consensus 94 ~G~~~~~~i~~G~~i~ 109 (263)
..-.+.++|.+||-|+
T Consensus 92 i~i~A~rdI~~GeELt 107 (114)
T 3bo5_A 92 LALFAAKDIVPEEELS 107 (114)
T ss_dssp EEEEESSCBCTTCEEE
T ss_pred EEEEECCCCCCCCEEE
T ss_conf 9999899659999899
No 17
>>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} (A:104-132,A:172-279)
Probab=55.36 E-value=11 Score=16.06 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=33.1
Q ss_pred EECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC--CCCCCEEEEE
Q ss_conf 21279827999971601034562178988999995068--8876221451
Q gi|254780728|r 123 SLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL--SERKPTVTVV 170 (263)
Q Consensus 123 ~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~--~~~~~~~~~i 170 (263)
..+++|.-+-++.+-...-.-+..+|||+|.|.-.... ..+.+..++.
T Consensus 47 e~~~~G~iPrsi~ViL~~dLvd~v~PGD~V~ItGI~~~~~~~~~~~~~~~ 96 (137)
T 1ltl_A 47 ENLSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLRTVRDERTKRFKNF 96 (137)
T ss_dssp TTCCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEEEEEETTTTEEEEE
T ss_pred CCCCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEEEECCCCCCCEEEE
T ss_conf 55899999708999991540085769987899999987548998723489
No 18
>>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ protein, ATP-binding, DNA-binding; 4.35A {Sulfolobus solfataricus} (A:106-281)
Probab=54.18 E-value=12 Score=15.95 Aligned_cols=37 Identities=19% Similarity=0.394 Sum_probs=27.6
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECC
Q ss_conf 1279827999971601034562178988999995068
Q gi|254780728|r 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSL 160 (263)
Q Consensus 124 ~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~ 160 (263)
.++.|.-.-++.|-...-.-+.++|||+|.|.-....
T Consensus 92 ~~~~g~~Pr~i~V~l~~dLvd~~~pGd~V~v~GI~~~ 128 (176)
T 3f9v_A 92 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILDI 128 (176)
T ss_dssp TSCTTSCCCEEEEEEEGGGTTCSCSSCEEEEEEECCC
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEE
T ss_conf 5889999861699997554685589998999989985
No 19
>>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus} (A:112-268)
Probab=50.59 E-value=12 Score=15.98 Aligned_cols=36 Identities=19% Similarity=0.379 Sum_probs=25.6
Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf 127982799997160103456217898899999506
Q gi|254780728|r 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 (263)
Q Consensus 124 ~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~ 159 (263)
.++.|..+-++.+....-.-+.++|||+|.|.-...
T Consensus 92 ~~~~g~~Pr~i~v~l~~dlv~~~~pGd~V~v~GIl~ 127 (157)
T 2vl6_A 92 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGILD 127 (157)
T ss_dssp GSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEEE
T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf 489999984899999746248547999999999998
No 20
>>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} (A:150-293)
Probab=50.54 E-value=9 Score=16.62 Aligned_cols=24 Identities=17% Similarity=-0.082 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCCCEECHHHEEEE
Q ss_conf 489997263688966275341315
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEWV 69 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~~ 69 (263)
--=+.|+++|++|+.|.+-.-...
T Consensus 27 G~Gv~A~~~I~~g~~i~~y~G~~~ 50 (144)
T 1h3i_A 27 GEGLFSKVAVGPNTVMSFYNGVRI 50 (144)
T ss_dssp SEEEEESSCBCTTCEEEEECCEEE
T ss_pred CEEEEEECCCCCEEEEEECCCCEE
T ss_conf 566899775498899997898593
No 21
>>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} (A:96-237)
Probab=49.29 E-value=9.7 Score=16.43 Aligned_cols=23 Identities=17% Similarity=-0.130 Sum_probs=16.9
Q ss_pred EEEEEECCCCCCCCEECHHHEEE
Q ss_conf 48999726368896627534131
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEW 68 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~ 68 (263)
=.-+.|+++|++|+.|..-.-.+
T Consensus 27 G~Gv~A~~~i~~g~~I~~~~G~~ 49 (142)
T 2f69_A 27 GEGLFSKVAVGPNTVMSFYNGVR 49 (142)
T ss_dssp CEEEEESSCBCTTCEEEEECCEE
T ss_pred CEEEEECCCCCCCCEEEEEEEEE
T ss_conf 66999896168999999946599
No 22
>>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} (A:1-40,A:109-166,A:215-299)
Probab=48.47 E-value=8.7 Score=16.72 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=7.0
Q ss_pred EEEEEECCCCCCCCEECH
Q ss_conf 489997263688966275
Q gi|254780728|r 46 INVLISKGDLAVGMVVTP 63 (263)
Q Consensus 46 v~V~va~~di~~G~~It~ 63 (263)
++.+--..|-|-+.+|-+
T Consensus 30 ~~~~~~~~~~~~~~~i~E 47 (183)
T 1mvh_A 30 VTLVNEVDDEPTGAVIYE 47 (183)
T ss_dssp EEEECSSCCCCCCSEEEC
T ss_pred EEEEECCCCCCCCCEEEE
T ss_conf 488869889987876884
No 23
>>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} (A:)
Probab=48.37 E-value=9.3 Score=16.54 Aligned_cols=24 Identities=17% Similarity=-0.003 Sum_probs=17.1
Q ss_pred EEEEEECCCCCCCCEECHHHEEEE
Q ss_conf 489997263688966275341315
Q gi|254780728|r 46 INVLISKGDLAVGMVVTPNILEWV 69 (263)
Q Consensus 46 v~V~va~~di~~G~~It~~dl~~~ 69 (263)
-.-+.|.++|++|+.|.+-.-...
T Consensus 40 G~Gvfa~~~i~~g~~i~~~~g~~~ 63 (170)
T 3ep0_A 40 GLGIFSKTWIKAGTEMGPFTGRVI 63 (170)
T ss_dssp SEEEEESSCBCTTCEEEEECCEEE
T ss_pred CEEEEECCCCCCCCEEEEECCEEE
T ss_conf 269958973399999998246897
No 24
>>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} (A:1-33,A:69-119)
Probab=46.76 E-value=12 Score=15.99 Aligned_cols=19 Identities=21% Similarity=0.331 Sum_probs=10.6
Q ss_pred CCCEEECCCCCCCCCCHHH
Q ss_conf 3504420227887125555
Q gi|254780728|r 94 DGVLVRVPILKGDPIRLEK 112 (263)
Q Consensus 94 ~G~~~~~~i~~G~~i~~~~ 112 (263)
..-++.++|.+|+-|+-+.
T Consensus 52 i~i~AlRdIk~GEELtisY 70 (84)
T 1n3j_A 52 MRIFTIKPIAIGEEITISY 70 (84)
T ss_dssp EEEEECSCBCSSEEECCCC
T ss_pred EEEEECCCCCCCCEEEEEC
T ss_conf 9999852549999999976
No 25
>>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural genomics consortium, SGC, alternative splicing; 2.50A {Homo sapiens} (A:)
Probab=45.46 E-value=16 Score=15.19 Aligned_cols=17 Identities=18% Similarity=0.137 Sum_probs=12.9
Q ss_pred EEECCCCCCCCEECHHH
Q ss_conf 99726368896627534
Q gi|254780728|r 49 LISKGDLAVGMVVTPNI 65 (263)
Q Consensus 49 ~va~~di~~G~~It~~d 65 (263)
+.|+++|++|+.|.+-.
T Consensus 34 vfA~~~I~~g~~i~~y~ 50 (152)
T 3ihx_A 34 VFSKRRIPKRTQFGPVE 50 (152)
T ss_dssp EEESSCBCSSCEECCCC
T ss_pred EEECCCCCCCCEEEEEE
T ss_conf 98996559999999988
No 26
>>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* (A:29-60,A:106-151)
Probab=45.08 E-value=11 Score=16.23 Aligned_cols=16 Identities=13% Similarity=0.108 Sum_probs=8.7
Q ss_pred CCCEEECCCCCCCCCC
Q ss_conf 3504420227887125
Q gi|254780728|r 94 DGVLVRVPILKGDPIR 109 (263)
Q Consensus 94 ~G~~~~~~i~~G~~i~ 109 (263)
..-++.++|.+||-|+
T Consensus 59 I~i~A~RDI~~GEELT 74 (78)
T 3f9x_A 59 LILIASRDIAAGEELL 74 (78)
T ss_dssp EEEEESSCBCTTCBCE
T ss_pred EEEEECCCCCCCCEEE
T ss_conf 9999998789999999
No 27
>>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S- adenosyl-L-methionine, structural genomics; HET: SAM; 1.99A {Homo sapiens} (A:1-20,A:99-146,A:192-236)
Probab=43.19 E-value=12 Score=15.95 Aligned_cols=15 Identities=13% Similarity=0.326 Sum_probs=6.3
Q ss_pred CCEEECCCCCCCCCC
Q ss_conf 504420227887125
Q gi|254780728|r 95 GVLVRVPILKGDPIR 109 (263)
Q Consensus 95 G~~~~~~i~~G~~i~ 109 (263)
+-++.++|.+||=|+
T Consensus 93 ~i~A~r~I~~GEELt 107 (113)
T 3h6l_A 93 GFFTTKLVPSGSELT 107 (113)
T ss_dssp EEEESSCBCTTCBCE
T ss_pred EEEECCCCCCCCEEE
T ss_conf 999898779999998
No 28
>>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* (A:1-82,A:124-192)
Probab=42.59 E-value=14 Score=15.45 Aligned_cols=15 Identities=13% Similarity=0.423 Sum_probs=6.7
Q ss_pred CEEECCCCCCCCCCH
Q ss_conf 044202278871255
Q gi|254780728|r 96 VLVRVPILKGDPIRL 110 (263)
Q Consensus 96 ~~~~~~i~~G~~i~~ 110 (263)
-++.++|.+||-|+-
T Consensus 110 ~~A~r~I~~GeELti 124 (151)
T 2w5y_A 110 IFAMRKIYRGEELTY 124 (151)
T ss_dssp EEESSCBCTTCEEEE
T ss_pred EEEECCCCCCCEEEE
T ss_conf 998043089999999
No 29
>>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens} (A:)
Probab=38.76 E-value=15 Score=15.30 Aligned_cols=20 Identities=20% Similarity=0.139 Sum_probs=13.9
Q ss_pred EEEEEEECCCCCCCCEECHH
Q ss_conf 04899972636889662753
Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPN 64 (263)
Q Consensus 45 ~v~V~va~~di~~G~~It~~ 64 (263)
.-.-+.|.++|++|+.|-+-
T Consensus 70 ~G~gv~a~~~i~kg~~i~~y 89 (196)
T 3dal_A 70 EVIGVMSKEYIPKGTRFGPL 89 (196)
T ss_dssp CEEEEEESSCBCTTEEECCC
T ss_pred CCEEEEECCEECCCCEEEEE
T ss_conf 70789889738899999975
No 30
>>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 2.15A {Homo sapiens} (A:)
Probab=38.71 E-value=15 Score=15.29 Aligned_cols=20 Identities=15% Similarity=0.039 Sum_probs=14.6
Q ss_pred EEEEECCCCCCCCEECHHHE
Q ss_conf 89997263688966275341
Q gi|254780728|r 47 NVLISKGDLAVGMVVTPNIL 66 (263)
Q Consensus 47 ~V~va~~di~~G~~It~~dl 66 (263)
.-+.|+++|++|+.|.+-.-
T Consensus 36 ~gv~a~~~i~kg~~i~~y~G 55 (151)
T 3db5_A 36 VGVWTGETIPVRTCFGPLIG 55 (151)
T ss_dssp EEEEESSCBCTTCEECCCCC
T ss_pred EEEEECCEECCCCEEEEEEE
T ss_conf 79998971048989888878
No 31
>>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3fpd_A* 3k5k_A* 2o8j_A* (A:)
Probab=33.10 E-value=21 Score=14.45 Aligned_cols=12 Identities=25% Similarity=0.199 Sum_probs=7.7
Q ss_pred CCCCCCEEEEEE
Q ss_conf 217898899999
Q gi|254780728|r 145 MIKPNDHVDVVM 156 (263)
Q Consensus 145 ~i~pGd~VDV~~ 156 (263)
.|..|+.|--|.
T Consensus 166 ~i~~g~~i~ey~ 177 (287)
T 3hna_A 166 DIPPGTFVCEYV 177 (287)
T ss_dssp CBCTTCEEEEEC
T ss_pred CCCCCCEEEEEE
T ss_conf 618999999993
No 32
>>3cyy_A Tight junction protein ZO-1; protein-ligand complex, alternative splicing, cell junction, membrane, phosphoprotein, polymorphism; 2.40A {Homo sapiens} (A:)
Probab=31.39 E-value=21 Score=14.42 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=17.6
Q ss_pred CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 300212798279999716010345621789889
Q gi|254780728|r 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 (263)
Q Consensus 120 ~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~V 152 (263)
++......|-....+.-+....-+|.|++||++
T Consensus 16 g~g~~~~~g~~V~~V~~~spA~~aG~L~~GD~I 48 (92)
T 3cyy_A 16 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVV 48 (92)
T ss_dssp CCCEEEEEEEEEEEECTTCHHHHSCCCCTTCEE
T ss_pred CCEEEECCCEEEEEECCCCHHHHCCCCCCCCEE
T ss_conf 861896897899998999989984999899999
No 33
>>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} (R:1-87)
Probab=28.60 E-value=30 Score=13.50 Aligned_cols=35 Identities=14% Similarity=0.141 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEE
Q ss_conf 21789889999950688876221451159789996
Q gi|254780728|r 145 MIKPNDHVDVVMVRSLSERKPTVTVVLSNIRVIAI 179 (263)
Q Consensus 145 ~i~pGd~VDV~~~~~~~~~~~~~~~il~~v~Vlav 179 (263)
.|++||+|-|+.-.+....+....+....-+|+--
T Consensus 15 ~i~kGD~V~Vi~G~dkGk~G~V~~V~~~~~~ViVe 49 (87)
T 2zjr_R 15 HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVE 49 (87)
T ss_dssp SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEES
T ss_pred EEECCCEEEEEECCCCCCEEEEEEEECCCCEEEEE
T ss_conf 12089999992558999616899998889999995
No 34
>>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* (A:1-83)
Probab=26.43 E-value=29 Score=13.60 Aligned_cols=11 Identities=18% Similarity=0.301 Sum_probs=4.5
Q ss_pred CCHHHHHHHHH
Q ss_conf 95367679999
Q gi|254780728|r 1 MKLTRLMGIVV 11 (263)
Q Consensus 1 Mk~~~i~~l~~ 11 (263)
||+..++.+++
T Consensus 1 Mkk~li~~~~~ 11 (83)
T 2a3m_A 1 MRKSLFAVMVL 11 (83)
T ss_dssp -----------
T ss_pred CCHHHHHHHHH
T ss_conf 90689999999
No 35
>>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae 86-028np} (A:)
Probab=24.59 E-value=30 Score=13.53 Aligned_cols=20 Identities=10% Similarity=0.217 Sum_probs=13.9
Q ss_pred CCCCCCCCCEEEEEEEECCC
Q ss_conf 45621789889999950688
Q gi|254780728|r 142 VGGMIKPNDHVDVVMVRSLS 161 (263)
Q Consensus 142 v~g~i~pGd~VDV~~~~~~~ 161 (263)
....|+.||||.||=-...|
T Consensus 70 ~d~~L~~GDRVEIYRPL~~D 89 (97)
T 2hj1_A 70 LTDVLKEGDRIEIYRPLLAD 89 (97)
T ss_dssp TTCBCCTTCEEEECCCCC--
T ss_pred CCCCCCCCCEEEEECCCCCC
T ss_conf 87717899999994565559
No 36
>>2ftc_C L3MT, MRP-L3, mitochondrial 39S ribosomal protein L3; mitochondrial ribosome, large ribosomal subunit, ribosomal RNA; 12.10A {Bos taurus} (C:1-29,C:104-211)
Probab=23.41 E-value=38 Score=12.93 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=11.2
Q ss_pred CCCCCCEEEEEEEECC
Q ss_conf 2178988999995068
Q gi|254780728|r 145 MIKPNDHVDVVMVRSL 160 (263)
Q Consensus 145 ~i~pGd~VDV~~~~~~ 160 (263)
.+++|++|||......
T Consensus 28 ~~~~Gq~VDV~g~TKG 43 (137)
T 2ftc_C 28 QVRPGQYVDVTAKTIG 43 (137)
T ss_pred EEECCCEEEEEEEEEC
T ss_conf 9703205889999825
No 37
>>1rz2_A Conserved hypothetical protein BA4783; sortase B protein, B. anthracis, structural genomics, PSI, protein structure initiative; 1.60A {Bacillus anthracis str} (A:)
Probab=22.54 E-value=25 Score=14.04 Aligned_cols=26 Identities=15% Similarity=-0.024 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53676799999999999999999983
Q gi|254780728|r 2 KLTRLMGIVVSGVFALVAGIIAMRLV 27 (263)
Q Consensus 2 k~~~i~~l~~~~vla~~a~~~~~~~~ 27 (263)
|.++++..++++++++++++..+.+.
T Consensus 8 ~~~~~~~~il~~~~~~~~~~~~~~~~ 33 (254)
T 1rz2_A 8 KKKIFFQRILTVVFLGTFFYSVYELG 33 (254)
T ss_dssp --------------------------
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 17789999999999999999999999
No 38
>>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylation, SH3 domain, protein bindin; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A (A:)
Probab=22.30 E-value=32 Score=13.42 Aligned_cols=33 Identities=18% Similarity=0.081 Sum_probs=17.5
Q ss_pred CCEEECCCCCEEEEEECCCCCCCCCCCCCCCEE
Q ss_conf 300212798279999716010345621789889
Q gi|254780728|r 120 GLSSLLPKGKRAATMDISISSAVGGMIKPNDHV 152 (263)
Q Consensus 120 ~ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~V 152 (263)
++......|-..-.+.-+....-+|.|++||++
T Consensus 14 g~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~I 46 (81)
T 2rcz_A 14 EYGLRLASHIFVKEISQDSLAARDGNIQEGDVV 46 (81)
T ss_dssp CCCEEEEEEEEEEEECTTSHHHHHSSCCTTCEE
T ss_pred CCEEEECCCEEEEEECCCCHHHHCCCCCCCCEE
T ss_conf 861896799899998999989985999889999
No 39
>>1twy_A ABC transporter, periplasmic substrate-binding protein; nysgxrc target, structural genomics, protein structure initiative; 1.65A {Vibrio cholerae o1 biovar eltor str} (A:)
Probab=20.45 E-value=25 Score=14.04 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=13.1
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 9536767999999999999999
Q gi|254780728|r 1 MKLTRLMGIVVSGVFALVAGII 22 (263)
Q Consensus 1 Mk~~~i~~l~~~~vla~~a~~~ 22 (263)
||+++++++++++++.++++..
T Consensus 1 Mk~~~~~~~~~~~~~~~~~~~~ 22 (290)
T 1twy_A 1 MSLIRMALAAVCALLFSITTMT 22 (290)
T ss_dssp ----------------------
T ss_pred CCCHHHHHHHHHHHHHHHHHCC
T ss_conf 9608999999999999998454
Done!