HHsearch results for GI: 254780728 and protein with PDBid: 3frn_A
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=99.35 E-value=4.2e-12 Score=88.32 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=94.4
Q ss_pred CCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCC--CC
Q ss_conf 8704899972636889662753413155251337920000211245400003504420227887125555001467--63
Q gi|254780728|r 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GG 120 (263)
Q Consensus 43 ~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~--~~ 120 (263)
....+|+||+++|++|+.|+++|++++++|.+.+|++++++ .+++.|+.++++|.+|++|+.++|..+.. .+
T Consensus 140 r~~~~VvVa~r~I~~G~~It~~Dl~~~~~~~~~~~~~~~~~------~~~viGk~a~r~i~~G~~i~~~~l~~~~~V~~G 213 (278)
T 3frn_A 140 RKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFD------VSEVVGKISRRYLKEGTVLTADMVKDPPDVVKG 213 (278)
T ss_dssp ECEEEEEEESSCBCTTCBCCTTTEEEEEEEGGGCSSCBCSC------HHHHTTCEESSCBCTTCBCBGGGEECCCSBCTT
T ss_pred EEEEEEEEECCCCCCCCEECHHHHCCEEEECCCCCCCCCCC------HHHHCCEEECCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf 99657999944429999967777012375315689754279------789589287035689994659983677514799
Q ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECC--CEEEEE
Q ss_conf 00212798279999716010345621789889999950688876221451159--789996
Q gi|254780728|r 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN--IRVIAI 179 (263)
Q Consensus 121 ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~~~~~il~~--v~Vlav 179 (263)
-...+.-+...++++.+....-.| ..||.|+|... +.+....-.+..+ |+|+.+
T Consensus 214 ~~V~i~~~~g~i~i~~~g~Al~~G--~~Gd~I~V~N~---~S~k~i~g~V~~~g~V~Vi~~ 269 (278)
T 3frn_A 214 QVVPAYVDMGSIKVTTFVEVLENG--YLGETVRAMNV---ESRKYVFGRVERGPVLRILEV 269 (278)
T ss_dssp CEEEEEC-------CEEEEESSCB--CTTCEEEEEC-----CCCEEEEEEETTTEEEECC-
T ss_pred CEEEEEEECCCEEEEEEEEECCCC--CCCCEEEEEEC---CCCCEEEEEEECCCEEEEEEE
T ss_conf 889999605759999978998788--98988999988---999989999956996999994