Query gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62] Match_columns 263 No_of_seqs 131 out of 616 Neff 7.7 Searched_HMMs 23785 Date Tue May 31 16:38:26 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254780728.hhm -d /home/congqian_1/database/pdb/pdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 3frn_A Flagellar protein FLGA; 99.3 4.2E-12 1.8E-16 88.3 9.4 126 43-179 140-269 (278) 2 1ops_A Type III AFP, type III 98.1 3.7E-06 1.6E-10 53.3 4.9 59 48-115 3-61 (64) 3 1msi_A Type III antifreeze pro 98.0 4.5E-06 1.9E-10 52.8 4.2 59 48-115 5-63 (70) 4 1wvo_A Sialic acid synthase; a 98.0 4.6E-06 2E-10 52.7 4.2 62 47-117 7-68 (79) 5 1c89_A RD3, antifreeze protein 97.8 6.8E-06 2.8E-10 51.8 2.7 61 45-114 71-131 (134) 6 1ucs_A Antifreeze peptide RD1; 97.8 1.9E-05 7.9E-10 49.2 4.2 58 48-114 4-61 (64) 7 2wqp_A Polysialic acid capsule 97.1 0.00058 2.4E-08 40.4 4.7 59 45-113 289-348 (349) 8 3g8r_A Probable spore coat pol 97.1 0.00054 2.3E-08 40.6 4.6 63 45-116 278-341 (350) 9 1vli_A Spore coat polysacchari 96.7 0.0012 5.2E-08 38.5 3.9 64 45-118 314-381 (385) 10 3k3s_A Altronate hydrolase; st 91.1 0.12 5E-06 26.8 2.9 52 44-112 29-80 (105) 11 3laz_A D-galactarate dehydrata 58.7 3.5 0.00015 18.1 1.7 49 44-111 23-72 (99) 12 1ltl_A DNA replication initiat 50.3 9.5 0.0004 15.6 3.0 35 125-159 191-225 (279) 13 2vl6_A SSO MCM N-TER, minichro 48.1 10 0.00044 15.4 3.0 35 124-158 203-237 (268) 14 3f9x_A Histone-lysine N-methyl 44.8 7.5 0.00032 16.2 1.6 15 48-62 43-57 (166) 15 1n3j_A A612L, histone H3 lysin 42.7 10 0.00043 15.4 2.0 17 48-64 17-33 (119) 16 2w5y_A Histone-lysine N-methyl 39.8 12 0.00049 15.0 1.9 14 95-108 65-78 (192) 17 1ml9_A Histone H3 methyltransf 38.4 13 0.00053 14.8 1.9 13 49-61 147-159 (302) 18 2r3a_A Histone-lysine N-methyl 38.4 13 0.00054 14.8 1.9 11 145-155 160-170 (300) 19 3ihx_A PR domain zinc finger p 34.1 16 0.00067 14.3 1.8 16 94-109 32-47 (152) 20 3h6l_A Histone-lysine N-methyl 30.6 17 0.00073 14.1 1.6 14 49-62 131-144 (278) 21 1mvh_A Cryptic LOCI regulator 29.9 18 0.00076 13.9 1.6 11 145-155 156-166 (299) 22 2e84_A High-molecular-weight c 29.6 17 0.00072 14.1 1.4 27 1-27 2-29 (556) 23 3db5_A PR domain zinc finger p 29.1 19 0.0008 13.8 1.6 14 49-62 38-51 (151) 24 3hna_A Histone-lysine N-methyl 28.2 20 0.00085 13.7 1.6 11 51-61 31-41 (287) 25 3ep0_A PR domain zinc finger p 24.2 26 0.0011 13.0 1.6 15 95-109 42-56 (170) 26 2hj1_A Hypothetical protein; s 22.6 25 0.001 13.2 1.1 19 142-160 70-88 (97) 27 3h9i_A Cation efflux system pr 21.0 17 0.0007 14.2 0.0 11 1-11 1-11 (407) 28 3n71_A Histone lysine methyltr 21.0 30 0.0013 12.6 2.3 18 45-62 17-34 (490) 29 3f8t_A Predicted ATPase involv 20.7 30 0.0013 12.6 3.1 39 121-159 124-168 (506) 30 2a3m_A COG3005: nitrate/TMAO r 20.5 17 0.00073 14.1 0.0 12 1-12 1-12 (130) No 1 >3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima} Probab=99.35 E-value=4.2e-12 Score=88.32 Aligned_cols=126 Identities=17% Similarity=0.169 Sum_probs=94.4 Q ss_pred CCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCC--CC Q ss_conf 8704899972636889662753413155251337920000211245400003504420227887125555001467--63 Q gi|254780728|r 43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GG 120 (263) Q Consensus 43 ~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~--~~ 120 (263) ....+|+||+++|++|+.|+++|++++++|.+.+|++++++ .+++.|+.++++|.+|++|+.++|..+.. .+ T Consensus 140 r~~~~VvVa~r~I~~G~~It~~Dl~~~~~~~~~~~~~~~~~------~~~viGk~a~r~i~~G~~i~~~~l~~~~~V~~G 213 (278) T 3frn_A 140 RKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFD------VSEVVGKISRRYLKEGTVLTADMVKDPPDVVKG 213 (278) T ss_dssp ECEEEEEEESSCBCTTCBCCTTTEEEEEEEGGGCSSCBCSC------HHHHTTCEESSCBCTTCBCBGGGEECCCSBCTT T ss_pred EEEEEEEEECCCCCCCCEECHHHHCCEEEECCCCCCCCCCC------HHHHCCEEECCCCCCCCCCCHHHCCCCCCCCCC T ss_conf 99657999944429999967777012375315689754279------789589287035689994659983677514799 Q ss_pred CEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECC--CEEEEE Q ss_conf 00212798279999716010345621789889999950688876221451159--789996 Q gi|254780728|r 121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN--IRVIAI 179 (263) Q Consensus 121 ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~~~~~il~~--v~Vlav 179 (263) -...+.-+...++++.+....-.| ..||.|+|... +.+....-.+..+ |+|+.+ T Consensus 214 ~~V~i~~~~g~i~i~~~g~Al~~G--~~Gd~I~V~N~---~S~k~i~g~V~~~g~V~Vi~~ 269 (278) T 3frn_A 214 QVVPAYVDMGSIKVTTFVEVLENG--YLGETVRAMNV---ESRKYVFGRVERGPVLRILEV 269 (278) T ss_dssp CEEEEEC-------CEEEEESSCB--CTTCEEEEEC-----CCCEEEEEEETTTEEEECC- T ss_pred CEEEEEEECCCEEEEEEEEECCCC--CCCCEEEEEEC---CCCCEEEEEEECCCEEEEEEE T ss_conf 889999605759999978998788--98988999988---999989999956996999994 No 2 >1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth inhibition, pretzel fold, glycoprotein; 2.00A {Macrozoarces americanus} SCOP: b.85.1.1 Probab=98.06 E-value=3.7e-06 Score=53.29 Aligned_cols=59 Identities=15% Similarity=0.207 Sum_probs=48.4 Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC Q ss_conf 99972636889662753413155251337920000211245400003504420227887125555001 Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263) Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263) =+||++||++|+.||.+|+..+.-+..-+++..+ +++.|+.+.+++.+|++|+.+++-. T Consensus 3 Siva~~~I~~g~~lt~~~l~~kr~~~~GI~p~~~---------~~iiGkka~~di~~g~~l~~d~vk~ 61 (64) T 1ops_A 3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEM---------SQLVGKQVNTPVAKGQTLMPNMVKT 61 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGG---------GGTTTCBBSSCBCTTCBCCGGGBTT T ss_pred CEEECCCCCCCCEEEHHHCEEEECCCCCCCHHHH---------HHHCCCEECCCCCCCCCCCHHHHHC T ss_conf 5887764699989616534477079997698799---------9875964625237959568999513 No 3 >1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} SCOP: b.85.1.1 Probab=97.99 E-value=4.5e-06 Score=52.79 Aligned_cols=59 Identities=8% Similarity=0.073 Sum_probs=49.2 Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC Q ss_conf 99972636889662753413155251337920000211245400003504420227887125555001 Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD 115 (263) Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~ 115 (263) =+||+++|++|+.|+.+|+.++.-....+|+..+ +.++|+.++.+|.+|++|+.+++-. T Consensus 5 SiVA~~~I~~G~~lt~~~l~~Krp~p~GI~P~~~---------~~IIGKkak~dI~~d~~I~~dmik~ 63 (70) T 1msi_A 5 SVVANQLIPINTALTLVMMRSEVVTPVGIPAEDI---------PRLVSMQVNRAVPLGTTLMPDMVKG 63 (70) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGH---------HHHTTCBBSSCBCTTCBCCGGGBTT T ss_pred EEEECCCCCCCCEECHHHEEEECCCCCCCCHHHH---------HHHHCHHHHCCCCCCCCCCHHHHHH T ss_conf 3686663599888268980065478898199999---------9982767616648968728999850 No 4 >1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens} Probab=97.99 E-value=4.6e-06 Score=52.74 Aligned_cols=62 Identities=19% Similarity=0.174 Sum_probs=51.4 Q ss_pred EEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC Q ss_conf 89997263688966275341315525133792000021124540000350442022788712555500146 Q gi|254780728|r 47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG 117 (263) Q Consensus 47 ~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~ 117 (263) .=+||+++|++|+.|+.+|+....-|..-+++.. .+++.|+.+..++.+|++|+.++|...+ T Consensus 7 ~SivA~~~I~kG~~it~~~l~~kr~p~~Gi~p~~---------~~~iiGkk~~~di~~ge~I~~~~i~n~~ 68 (79) T 1wvo_A 7 GSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPED---------IFNLVGKKVLVTVEEDDTIMEELVDNHG 68 (79) T ss_dssp CEEEESSCBCTTCBCCGGGEEEETTCCCSSCSSS---------HHHHTTCBBSSCBCTTCBCCGGGBCCCC T ss_pred EEEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHH---------HHHHHCHHHHCCCCCCCCCCHHHHHHCC T ss_conf 8688898338989914865604358999879899---------9998162744233895915899986046 No 5 >1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} SCOP: b.85.1.1 b.85.1.1 PDB: 1c8a_A 3nla_A 3rdn_A Probab=97.82 E-value=6.8e-06 Score=51.78 Aligned_cols=61 Identities=7% Similarity=0.104 Sum_probs=50.6 Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCC Q ss_conf 0489997263688966275341315525133792000021124540000350442022788712555500 Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 (263) Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~ 114 (263) ..+-+||++||++|+.||.+|+..+.-|..-+++.. .+++.|+.+.+++.+|++|+.+++- T Consensus 71 ~rksiva~~~i~~G~~~t~~~i~~kr~p~~Gi~p~~---------~~~ilGk~~~~di~~~~~i~~d~i~ 131 (134) T 1c89_A 71 GLKSVVANQLIPINTALTLVMMKAEEVSPKGIPSEE---------ISKLVGMQVNRAVYLDQTLMPDMVK 131 (134) T ss_dssp SSEEEEESSCBCSSCCBCTTTCEEEECSSCCCBSSS---------HHHHTTBCCSSCBCSSEECCTTTSC T ss_pred CEEEEEECCCCCCCCCCCHHHEEEEECCCCCCCHHH---------HHHHCCCEECCCCCCCCCCCHHHHH T ss_conf 026899877408988738899336718999989999---------9986391051663896902899960 No 6 >1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} SCOP: b.85.1.1 PDB: 9ame_A 1ame_A 1kde_A 1kdf_A 1gzi_A 1hg7_A 1b7i_A 2spg_A 1jab_A 1b7j_A 2msj_A 1ekl_A 4ame_A 7ame_A 2ame_A 1msj_A 1b7k_A 6ame_A 9msi_A 2jia_A ... Probab=97.76 E-value=1.9e-05 Score=49.16 Aligned_cols=58 Identities=9% Similarity=0.108 Sum_probs=47.3 Q ss_pred EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCC Q ss_conf 9997263688966275341315525133792000021124540000350442022788712555500 Q gi|254780728|r 48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV 114 (263) Q Consensus 48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~ 114 (263) =+||+++||+|+.||.+|++++......+|+.. ..+++|+.++..+..++.|.++++- T Consensus 4 SvVA~~~Ip~gt~lT~~mlt~KV~~P~GIp~e~---------i~~iVGk~v~~~V~~D~~l~~~mvk 61 (64) T 1ucs_A 4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAEE---------IPKLVGMQVNRAVPLGTTLMPDMVK 61 (64) T ss_dssp EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGG---------HHHHTTCBBSSCBCTTCBCCGGGBT T ss_pred CEEEEEECCCCCCCCHHHHCEECCCCCCCCHHH---------HHHHHHHHHHCCCCCCCCCCHHHHH T ss_conf 158611227877546988402046989989899---------9998718984043689721688873 No 7 >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A Probab=97.07 E-value=0.00058 Score=40.42 Aligned_cols=59 Identities=19% Similarity=0.239 Sum_probs=47.5 Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCHHH-CCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC Q ss_conf 0489997263688966275341315525133-79200002112454000035044202278871255550 Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL 113 (263) Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~-~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l 113 (263) ..+-++|+++|++|+.|+.+|+...+ |... +++ ...+.+.|+.+++++.+|++|..++| T Consensus 289 ~~rs~~a~k~i~kG~~i~~~~i~~~R-p~~g~l~~---------~~~~~i~Gk~~~~~i~~~~~i~~~di 348 (349) T 2wqp_A 289 AFASVVADKDIKKGELLSGDNLWVKR-PGNGDFSV---------NEYETLFGKVAACNIRKGAQIKKTDI 348 (349) T ss_dssp HSCEEEESSCBCTTCBCCTTTEEEES-CTTSSSBG---------GGGGGGTTCBBSSCBCTTCBCCGGGB T ss_pred HCEEEEEECCCCCCCEECHHHEEEEC-CCCCCCCH---------HHHHHHCCCEECCCCCCCCCCCHHHC T ss_conf 14689994613889895689957878-97998499---------99998669177554589796897887 No 8 >3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} Probab=97.06 E-value=0.00054 Score=40.56 Aligned_cols=63 Identities=13% Similarity=0.147 Sum_probs=49.5 Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCH-HHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC Q ss_conf 04899972636889662753413155251-3379200002112454000035044202278871255550014 Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPE-ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR 116 (263) Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~-~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~ 116 (263) ..+-++++++|.+|+.|+.+|+.+++=+. ..+++.. .+.+.|+.++.+|.+|++|+.++|-.- T Consensus 278 ~rrsi~a~k~ikkG~~it~~di~~~rP~~~~gi~~~~---------~~~ilgk~~~~~i~~~~~I~~~dle~~ 341 (350) T 3g8r_A 278 LRRGVFATRPVAAGEALTADNVSFAFPPVEGQLTANE---------WSKYVRYTAKTPIAADAPVMAADLEPV 341 (350) T ss_dssp TSCEEEESSCBCTTCBCBTTBEEEEBCCCTTBCBGGG---------CCSSCCEEESSCBCTTCBCBGGGEEEC T ss_pred EEEEEEEECCCCCCCEECHHHEEEECCCCCCCCCHHH---------HHHHCCEEECCCCCCCCCCCHHHHHHH T ss_conf 4368999373388899348882487789989969899---------998659047465589694798993554 No 9 >1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 Probab=96.68 E-value=0.0012 Score=38.45 Aligned_cols=64 Identities=13% Similarity=0.204 Sum_probs=49.2 Q ss_pred EEEEEEECCCCCCCCEECHHHEEEEECCH---HHCCCHHCCCCCCCCCCHHCC-CCEEECCCCCCCCCCHHHCCCCCC Q ss_conf 04899972636889662753413155251---337920000211245400003-504420227887125555001467 Q gi|254780728|r 45 FINVLISKGDLAVGMVVTPNILEWVAFPE---ENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVDRGN 118 (263) Q Consensus 45 ~v~V~va~~di~~G~~It~~dl~~~~~p~---~~~p~~a~~~~~~~~~~~~~~-G~~~~~~i~~G~~i~~~~l~~~~~ 118 (263) ..+-++|+++|++|+.|+.+|+..++ |. ..+++.. .+.+. |+.++.++.+|++|+.+++...+. T Consensus 314 ~rrsi~a~~~i~kG~~i~~~di~~~R-Pg~~~~Gi~~~~---------~~~ii~Gk~~~~di~~~~~I~~~di~~k~~ 381 (385) T 1vli_A 314 AYRGIFTTAPIQKGEAFSEDNIAVLR-PGQKPQGLHPRF---------FELLTSGVRAVRDIPADTGIVWDDILLKDS 381 (385) T ss_dssp TSCEEEESSCBCTTCBCCTTTEEEEC-CTTSCCCBCGGG---------HHHHHTTCBCSSCBCTTCBCCGGGTSCCC- T ss_pred CCEEEEEECCCCCCCEECHHHEEEEC-CCCCCCCCCHHH---------HHHHHCCCEEECCCCCCCCCCHHHHCCCCC T ss_conf 45799990512889897589946868-778888879899---------999867969906469979868999166578 No 10 >3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str} Probab=91.12 E-value=0.12 Score=26.79 Aligned_cols=52 Identities=23% Similarity=0.199 Sum_probs=36.1 Q ss_pred CEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHH Q ss_conf 704899972636889662753413155251337920000211245400003504420227887125555 Q gi|254780728|r 44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK 112 (263) Q Consensus 44 ~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~ 112 (263) +.=+|.||-+||++|+.|.-++....- .+.+|.+ =|++..+|.+|++|.+.- T Consensus 29 p~DNVaVAl~dl~~G~~v~~~~~~i~l--~~~Ip~G---------------HKiAl~dI~~Ge~IiKYG 80 (105) T 3k3s_A 29 ALDNVAVALADLAEGTEVSVDNQTVTL--RQDVARG---------------HKFALTDIAKGANVIKYG 80 (105) T ss_dssp TTCSEEEESSCBCTTCEEEETTEEEEC--SSCBCTT---------------CEEESSCBCTTCEEEETT T ss_pred CCCCEEEECCCCCCCCEEEECCEEEEE--CCCCCCC---------------CEEEEEECCCCCEEEECC T ss_conf 999899967636999999559917998--8668888---------------999841037999759999 No 11 >3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.92A {Escherichia coli} Probab=58.66 E-value=3.5 Score=18.11 Aligned_cols=49 Identities=20% Similarity=0.024 Sum_probs=30.6 Q ss_pred CEEEEEEECCCCCCCCEECHHH-EEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHH Q ss_conf 7048999726368896627534-1315525133792000021124540000350442022788712555 Q gi|254780728|r 44 KFINVLISKGDLAVGMVVTPNI-LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE 111 (263) Q Consensus 44 ~~v~V~va~~di~~G~~It~~d-l~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~ 111 (263) +.=+|.++-+|+..|+.+.-++ +.. .+.+|.+ -|++..+|.+|+.|.+. T Consensus 23 p~DNVaval~dl~~g~~~~~~~~i~~----~~~Ip~G---------------HKiAl~dI~~G~~I~KY 72 (99) T 3laz_A 23 DTDNVAIIVNDNGLKAGTRFPDGLEL----IEHIPQG---------------HKVALLDIPANGEIIRY 72 (99) T ss_dssp TTCSEEEEESTTCBCTTCBCTTSCBC----SSCBCTT---------------CEEESSCBCTTCEEEET T ss_pred CCCCEEEEECCCCCCCCEEECCCEEE----CCCCCCC---------------CEEEECCCCCCCEEEEC T ss_conf 98989998566777981584588798----8768999---------------98984465898987998 No 12 >1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11 Probab=50.33 E-value=9.5 Score=15.58 Aligned_cols=35 Identities=17% Similarity=0.307 Sum_probs=24.8 Q ss_pred CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC Q ss_conf 27982799997160103456217898899999506 Q gi|254780728|r 125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS 159 (263) Q Consensus 125 l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~ 159 (263) ++.|..+-++.+....-.-+.++|||+|.|..... T Consensus 191 ~~~G~~Pr~i~v~l~~dLvd~~~pGd~V~i~GI~~ 225 (279) T 1ltl_A 191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLR 225 (279) T ss_dssp CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEE T ss_pred CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE T ss_conf 88999970899999244008577997479999998 No 13 >2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus} Probab=48.06 E-value=10 Score=15.37 Aligned_cols=35 Identities=20% Similarity=0.385 Sum_probs=24.3 Q ss_pred ECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE Q ss_conf 12798279999716010345621789889999950 Q gi|254780728|r 124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR 158 (263) Q Consensus 124 ~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~ 158 (263) .++.|..+-++.+....-.-+.++|||+|.|.-.. T Consensus 203 ~~~~G~~Pr~i~v~l~~dLvd~~~pGd~V~i~Gil 237 (268) T 2vl6_A 203 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGIL 237 (268) T ss_dssp GSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEE T ss_pred CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEE T ss_conf 47889999689999966733841799999999999 No 14 >3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A* Probab=44.82 E-value=7.5 Score=16.19 Aligned_cols=15 Identities=20% Similarity=0.262 Sum_probs=12.7 Q ss_pred EEEECCCCCCCCEEC Q ss_conf 999726368896627 Q gi|254780728|r 48 VLISKGDLAVGMVVT 62 (263) Q Consensus 48 V~va~~di~~G~~It 62 (263) =+.|+++|++|+.|. T Consensus 43 GlfA~~~I~kg~~I~ 57 (166) T 3f9x_A 43 GVIATKQFSRGDFVV 57 (166) T ss_dssp EEEESSCBCTTCEEE T ss_pred EEEECCCCCCCCEEE T ss_conf 898898108999999 No 15 >1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* Probab=42.74 E-value=10 Score=15.41 Aligned_cols=17 Identities=12% Similarity=0.206 Sum_probs=13.0 Q ss_pred EEEECCCCCCCCEECHH Q ss_conf 99972636889662753 Q gi|254780728|r 48 VLISKGDLAVGMVVTPN 64 (263) Q Consensus 48 V~va~~di~~G~~It~~ 64 (263) =+.|+++|++|+.|..- T Consensus 17 GvfA~~~i~~g~~i~~~ 33 (119) T 1n3j_A 17 GVFARKSFEKGELVEEC 33 (119) T ss_dssp EEEECCCBCSCEEECCC T ss_pred EEEECCHHHCCCEECCC T ss_conf 89889445268655244 No 16 >2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A* Probab=39.82 E-value=12 Score=15.05 Aligned_cols=14 Identities=21% Similarity=0.472 Sum_probs=6.6 Q ss_pred CCEEECCCCCCCCC Q ss_conf 50442022788712 Q gi|254780728|r 95 GVLVRVPILKGDPI 108 (263) Q Consensus 95 G~~~~~~i~~G~~i 108 (263) |-.++.+|.+|++| T Consensus 65 GlFA~~~I~kG~~I 78 (192) T 2w5y_A 65 GLFCKRNIDAGEMV 78 (192) T ss_dssp EEEESSCBCTTCEE T ss_pred EEEECCCCCCCCEE T ss_conf 78289824999999 No 17 >1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A* Probab=38.42 E-value=13 Score=14.84 Aligned_cols=13 Identities=15% Similarity=0.197 Sum_probs=6.2 Q ss_pred EEECCCCCCCCEE Q ss_conf 9972636889662 Q gi|254780728|r 49 LISKGDLAVGMVV 61 (263) Q Consensus 49 ~va~~di~~G~~I 61 (263) +.|.++|++|+.| T Consensus 147 v~a~~~I~kG~~I 159 (302) T 1ml9_A 147 VKCPVNIKRGQFV 159 (302) T ss_dssp EECSSCBCTTCEE T ss_pred EEECCCCCCCCEE T ss_conf 9679763899999 No 18 >2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens} Probab=38.38 E-value=13 Score=14.83 Aligned_cols=11 Identities=27% Similarity=0.018 Sum_probs=5.6 Q ss_pred CCCCCCEEEEE Q ss_conf 21789889999 Q gi|254780728|r 145 MIKPNDHVDVV 155 (263) Q Consensus 145 ~i~pGd~VDV~ 155 (263) .|..|+.|--| T Consensus 160 ~I~kG~~I~eY 170 (300) T 2r3a_A 160 KIKRMSFVMEY 170 (300) T ss_dssp CBCTTCEEEEE T ss_pred CCCCCCEEEEE T ss_conf 75999899998 No 19 >3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural genomics consortium, SGC, alternative splicing; 2.50A {Homo sapiens} Probab=34.09 E-value=16 Score=14.27 Aligned_cols=16 Identities=25% Similarity=0.306 Sum_probs=8.1 Q ss_pred CCCEEECCCCCCCCCC Q ss_conf 3504420227887125 Q gi|254780728|r 94 DGVLVRVPILKGDPIR 109 (263) Q Consensus 94 ~G~~~~~~i~~G~~i~ 109 (263) .|-.++++|++|+.|- T Consensus 32 ~GVFA~~~IpkGt~i~ 47 (152) T 3ihx_A 32 GGVFSKRRIPKRTQFG 47 (152) T ss_dssp CSEEESSCBCSSCEEC T ss_pred CEEEECCCCCCCCEEE T ss_conf 6898996059999999 No 20 >3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S- adenosyl-L-methionine, structural genomics; HET: SAM; 1.99A {Homo sapiens} Probab=30.59 E-value=17 Score=14.05 Aligned_cols=14 Identities=29% Similarity=0.268 Sum_probs=7.8 Q ss_pred EEECCCCCCCCEEC Q ss_conf 99726368896627 Q gi|254780728|r 49 LISKGDLAVGMVVT 62 (263) Q Consensus 49 ~va~~di~~G~~It 62 (263) +.|.++|++|+.|. T Consensus 131 lfA~~~I~kG~~I~ 144 (278) T 3h6l_A 131 LRAAKDLPSNTFVL 144 (278) T ss_dssp EEESSCBCTTCEEE T ss_pred EEECCCCCCCCEEE T ss_conf 97898059999999 No 21 >1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A Probab=29.91 E-value=18 Score=13.94 Aligned_cols=11 Identities=0% Similarity=0.087 Sum_probs=6.2 Q ss_pred CCCCCCEEEEE Q ss_conf 21789889999 Q gi|254780728|r 145 MIKPNDHVDVV 155 (263) Q Consensus 145 ~i~pGd~VDV~ 155 (263) .|..|+.|--| T Consensus 156 ~I~kG~~I~eY 166 (299) T 1mvh_A 156 FAPAGTFITCY 166 (299) T ss_dssp CBCTTCEEEEC T ss_pred CCCCCCEEEEE T ss_conf 50799989999 No 22 >2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str} Probab=29.57 E-value=17 Score=14.07 Aligned_cols=27 Identities=15% Similarity=-0.139 Sum_probs=11.9 Q ss_pred CCHHHHHH-HHHHHHHHHHHHHHHHHHH Q ss_conf 95367679-9999999999999999983 Q gi|254780728|r 1 MKLTRLMG-IVVSGVFALVAGIIAMRLV 27 (263) Q Consensus 1 Mk~~~i~~-l~~~~vla~~a~~~~~~~~ 27 (263) |+.||++. +.+.++++++++++++.+. T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (556) T 2e84_A 2 MNAKSLLRWAGALVAVAAVTVFGLDARG 29 (556) T ss_dssp ---------------------------- T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 8731378888999999999888888610 No 23 >3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 2.15A {Homo sapiens} Probab=29.13 E-value=19 Score=13.81 Aligned_cols=14 Identities=7% Similarity=0.086 Sum_probs=6.8 Q ss_pred EEECCCCCCCCEEC Q ss_conf 99726368896627 Q gi|254780728|r 49 LISKGDLAVGMVVT 62 (263) Q Consensus 49 ~va~~di~~G~~It 62 (263) +.|+++|++|+.|. T Consensus 38 VfA~~~I~kgt~ig 51 (151) T 3db5_A 38 VWTGETIPVRTCFG 51 (151) T ss_dssp EEESSCBCTTCEEC T ss_pred EEECCEECCCCEEE T ss_conf 99898608999999 No 24 >3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3fpd_A* 3k5k_A* 2o8j_A* Probab=28.22 E-value=20 Score=13.66 Aligned_cols=11 Identities=27% Similarity=0.259 Sum_probs=6.2 Q ss_pred ECCCCCCCCEE Q ss_conf 72636889662 Q gi|254780728|r 51 SKGDLAVGMVV 61 (263) Q Consensus 51 a~~di~~G~~I 61 (263) .-.||..|..- T Consensus 31 ~~~DiS~G~E~ 41 (287) T 3hna_A 31 VSRDIARGYER 41 (287) T ss_dssp EESCTTTTCSS T ss_pred EEHHHCCCCCC T ss_conf 60540699778 No 25 >3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens} Probab=24.20 E-value=26 Score=13.02 Aligned_cols=15 Identities=20% Similarity=0.390 Sum_probs=7.1 Q ss_pred CCEEECCCCCCCCCC Q ss_conf 504420227887125 Q gi|254780728|r 95 GVLVRVPILKGDPIR 109 (263) Q Consensus 95 G~~~~~~i~~G~~i~ 109 (263) |-.++++|++|+.|- T Consensus 42 GVFA~~~I~kGt~ig 56 (170) T 3ep0_A 42 GIFSKTWIKAGTEMG 56 (170) T ss_dssp EEEESSCBCTTCEEE T ss_pred EEEECCEECCCCEEE T ss_conf 895898218999999 No 26 >2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae 86-028np} SCOP: d.15.3.4 Probab=22.56 E-value=25 Score=13.15 Aligned_cols=19 Identities=11% Similarity=0.219 Sum_probs=13.5 Q ss_pred CCCCCCCCCEEEEEEEECC Q ss_conf 4562178988999995068 Q gi|254780728|r 142 VGGMIKPNDHVDVVMVRSL 160 (263) Q Consensus 142 v~g~i~pGd~VDV~~~~~~ 160 (263) ....|+.||||.||=.... T Consensus 70 ld~~L~~GDRVEIYRPL~~ 88 (97) T 2hj1_A 70 LTDVLKEGDRIEIYRPLLA 88 (97) T ss_dssp TTCBCCTTCEEEECCCCC- T ss_pred CCCCCCCCCEEEEECCCCC T ss_conf 8881789999999456565 No 27 >3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B Probab=21.01 E-value=17 Score=14.16 Aligned_cols=11 Identities=27% Similarity=0.072 Sum_probs=5.5 Q ss_pred CCHHHHHHHHH Q ss_conf 95367679999 Q gi|254780728|r 1 MKLTRLMGIVV 11 (263) Q Consensus 1 Mk~~~i~~l~~ 11 (263) ||+..++..++ T Consensus 1 mkk~~~~~~~~ 11 (407) T 3h9i_A 1 MKKIALIIGSM 11 (407) T ss_dssp ----------- T ss_pred CCCHHHHHHHH T ss_conf 95069999999 No 28 >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} Probab=20.97 E-value=30 Score=12.63 Aligned_cols=18 Identities=11% Similarity=-0.105 Sum_probs=15.0 Q ss_pred EEEEEEECCCCCCCCEEC Q ss_conf 048999726368896627 Q gi|254780728|r 45 FINVLISKGDLAVGMVVT 62 (263) Q Consensus 45 ~v~V~va~~di~~G~~It 62 (263) .=+-++|+|||++|+.|= T Consensus 17 kGR~lvAtrdi~~Ge~il 34 (490) T 3n71_A 17 KGRGLKATKEFWAADVIF 34 (490) T ss_dssp SCEEEEESSCBCTTCEEE T ss_pred CCCEEEECCCCCCCCEEE T ss_conf 834798897459899999 No 29 >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} Probab=20.74 E-value=30 Score=12.61 Aligned_cols=39 Identities=15% Similarity=0.217 Sum_probs=26.9 Q ss_pred CEEECCCCCEEEEEECCCCCC-C-----CCCCCCCCEEEEEEEEC Q ss_conf 002127982799997160103-4-----56217898899999506 Q gi|254780728|r 121 LSSLLPKGKRAATMDISISSA-V-----GGMIKPNDHVDVVMVRS 159 (263) Q Consensus 121 ls~~l~~g~ravsi~v~~~~~-v-----~g~i~pGd~VDV~~~~~ 159 (263) ....++.|.+.-++.|....- + ++.++|||+|.|.-... T Consensus 124 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~PGd~v~v~Gi~~ 168 (506) T 3f8t_A 124 VVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVR 168 (506) T ss_dssp EEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEE T ss_pred CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEE T ss_conf 655588888885589995365010125667479899899999993 No 30 >2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A* Probab=20.49 E-value=17 Score=14.05 Aligned_cols=12 Identities=17% Similarity=0.307 Sum_probs=6.0 Q ss_pred CCHHHHHHHHHH Q ss_conf 953676799999 Q gi|254780728|r 1 MKLTRLMGIVVS 12 (263) Q Consensus 1 Mk~~~i~~l~~~ 12 (263) ||++.+.+++++ T Consensus 1 mkk~l~~~~~~~ 12 (130) T 2a3m_A 1 MRKSLFAVMVLA 12 (130) T ss_dssp ------------ T ss_pred CHHHHHHHHHHH T ss_conf 904999999999 Done!