Query         gi|254780728|ref|YP_003065141.1| pilus assembly protein [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 263
No_of_seqs    131 out of 616
Neff          7.7 
Searched_HMMs 23785
Date          Tue May 31 16:38:26 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254780728.hhm -d /home/congqian_1/database/pdb/pdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 3frn_A Flagellar protein FLGA;  99.3 4.2E-12 1.8E-16   88.3   9.4  126   43-179   140-269 (278)
  2 1ops_A Type III AFP, type III   98.1 3.7E-06 1.6E-10   53.3   4.9   59   48-115     3-61  (64)
  3 1msi_A Type III antifreeze pro  98.0 4.5E-06 1.9E-10   52.8   4.2   59   48-115     5-63  (70)
  4 1wvo_A Sialic acid synthase; a  98.0 4.6E-06   2E-10   52.7   4.2   62   47-117     7-68  (79)
  5 1c89_A RD3, antifreeze protein  97.8 6.8E-06 2.8E-10   51.8   2.7   61   45-114    71-131 (134)
  6 1ucs_A Antifreeze peptide RD1;  97.8 1.9E-05 7.9E-10   49.2   4.2   58   48-114     4-61  (64)
  7 2wqp_A Polysialic acid capsule  97.1 0.00058 2.4E-08   40.4   4.7   59   45-113   289-348 (349)
  8 3g8r_A Probable spore coat pol  97.1 0.00054 2.3E-08   40.6   4.6   63   45-116   278-341 (350)
  9 1vli_A Spore coat polysacchari  96.7  0.0012 5.2E-08   38.5   3.9   64   45-118   314-381 (385)
 10 3k3s_A Altronate hydrolase; st  91.1    0.12   5E-06   26.8   2.9   52   44-112    29-80  (105)
 11 3laz_A D-galactarate dehydrata  58.7     3.5 0.00015   18.1   1.7   49   44-111    23-72  (99)
 12 1ltl_A DNA replication initiat  50.3     9.5  0.0004   15.6   3.0   35  125-159   191-225 (279)
 13 2vl6_A SSO MCM N-TER, minichro  48.1      10 0.00044   15.4   3.0   35  124-158   203-237 (268)
 14 3f9x_A Histone-lysine N-methyl  44.8     7.5 0.00032   16.2   1.6   15   48-62     43-57  (166)
 15 1n3j_A A612L, histone H3 lysin  42.7      10 0.00043   15.4   2.0   17   48-64     17-33  (119)
 16 2w5y_A Histone-lysine N-methyl  39.8      12 0.00049   15.0   1.9   14   95-108    65-78  (192)
 17 1ml9_A Histone H3 methyltransf  38.4      13 0.00053   14.8   1.9   13   49-61    147-159 (302)
 18 2r3a_A Histone-lysine N-methyl  38.4      13 0.00054   14.8   1.9   11  145-155   160-170 (300)
 19 3ihx_A PR domain zinc finger p  34.1      16 0.00067   14.3   1.8   16   94-109    32-47  (152)
 20 3h6l_A Histone-lysine N-methyl  30.6      17 0.00073   14.1   1.6   14   49-62    131-144 (278)
 21 1mvh_A Cryptic LOCI regulator   29.9      18 0.00076   13.9   1.6   11  145-155   156-166 (299)
 22 2e84_A High-molecular-weight c  29.6      17 0.00072   14.1   1.4   27    1-27      2-29  (556)
 23 3db5_A PR domain zinc finger p  29.1      19  0.0008   13.8   1.6   14   49-62     38-51  (151)
 24 3hna_A Histone-lysine N-methyl  28.2      20 0.00085   13.7   1.6   11   51-61     31-41  (287)
 25 3ep0_A PR domain zinc finger p  24.2      26  0.0011   13.0   1.6   15   95-109    42-56  (170)
 26 2hj1_A Hypothetical protein; s  22.6      25   0.001   13.2   1.1   19  142-160    70-88  (97)
 27 3h9i_A Cation efflux system pr  21.0      17  0.0007   14.2   0.0   11    1-11      1-11  (407)
 28 3n71_A Histone lysine methyltr  21.0      30  0.0013   12.6   2.3   18   45-62     17-34  (490)
 29 3f8t_A Predicted ATPase involv  20.7      30  0.0013   12.6   3.1   39  121-159   124-168 (506)
 30 2a3m_A COG3005: nitrate/TMAO r  20.5      17 0.00073   14.1   0.0   12    1-12      1-12  (130)

No 1  
>3frn_A Flagellar protein FLGA; structural genomics, periplasmic, PSI-2, protein structure initiative; 2.05A {Thermotoga maritima}
Probab=99.35  E-value=4.2e-12  Score=88.32  Aligned_cols=126  Identities=17%  Similarity=0.169  Sum_probs=94.4

Q ss_pred             CCEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCCC--CC
Q ss_conf             8704899972636889662753413155251337920000211245400003504420227887125555001467--63
Q gi|254780728|r   43 AKFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRGN--GG  120 (263)
Q Consensus        43 ~~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~~--~~  120 (263)
                      ....+|+||+++|++|+.|+++|++++++|.+.+|++++++      .+++.|+.++++|.+|++|+.++|..+..  .+
T Consensus       140 r~~~~VvVa~r~I~~G~~It~~Dl~~~~~~~~~~~~~~~~~------~~~viGk~a~r~i~~G~~i~~~~l~~~~~V~~G  213 (278)
T 3frn_A          140 RKERNVVVLKRNINVGDVIKEEDVRLEKRNVFEIYGEPFFD------VSEVVGKISRRYLKEGTVLTADMVKDPPDVVKG  213 (278)
T ss_dssp             ECEEEEEEESSCBCTTCBCCTTTEEEEEEEGGGCSSCBCSC------HHHHTTCEESSCBCTTCBCBGGGEECCCSBCTT
T ss_pred             EEEEEEEEECCCCCCCCEECHHHHCCEEEECCCCCCCCCCC------HHHHCCEEECCCCCCCCCCCHHHCCCCCCCCCC
T ss_conf             99657999944429999967777012375315689754279------789589287035689994659983677514799


Q ss_pred             CEEECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEECC--CEEEEE
Q ss_conf             00212798279999716010345621789889999950688876221451159--789996
Q gi|254780728|r  121 LSSLLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRSLSERKPTVTVVLSN--IRVIAI  179 (263)
Q Consensus       121 ls~~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~~~~~~~~~~~il~~--v~Vlav  179 (263)
                      -...+.-+...++++.+....-.|  ..||.|+|...   +.+....-.+..+  |+|+.+
T Consensus       214 ~~V~i~~~~g~i~i~~~g~Al~~G--~~Gd~I~V~N~---~S~k~i~g~V~~~g~V~Vi~~  269 (278)
T 3frn_A          214 QVVPAYVDMGSIKVTTFVEVLENG--YLGETVRAMNV---ESRKYVFGRVERGPVLRILEV  269 (278)
T ss_dssp             CEEEEEC-------CEEEEESSCB--CTTCEEEEEC-----CCCEEEEEEETTTEEEECC-
T ss_pred             CEEEEEEECCCEEEEEEEEECCCC--CCCCEEEEEEC---CCCCEEEEEEECCCEEEEEEE
T ss_conf             889999605759999978998788--98988999988---999989999956996999994


No 2  
>1ops_A Type III AFP, type III antifreeze protein; ICE crystal growth inhibition, pretzel fold, glycoprotein; 2.00A {Macrozoarces americanus} SCOP: b.85.1.1
Probab=98.06  E-value=3.7e-06  Score=53.29  Aligned_cols=59  Identities=15%  Similarity=0.207  Sum_probs=48.4

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf             99972636889662753413155251337920000211245400003504420227887125555001
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD  115 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~  115 (263)
                      =+||++||++|+.||.+|+..+.-+..-+++..+         +++.|+.+.+++.+|++|+.+++-.
T Consensus         3 Siva~~~I~~g~~lt~~~l~~kr~~~~GI~p~~~---------~~iiGkka~~di~~g~~l~~d~vk~   61 (64)
T 1ops_A            3 SVVATQLIPMNTALTPAMMEGKVTNPIGIPFAEM---------SQLVGKQVNTPVAKGQTLMPNMVKT   61 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGG---------GGTTTCBBSSCBCTTCBCCGGGBTT
T ss_pred             CEEECCCCCCCCEEEHHHCEEEECCCCCCCHHHH---------HHHCCCEECCCCCCCCCCCHHHHHC
T ss_conf             5887764699989616534477079997698799---------9875964625237959568999513


No 3  
>1msi_A Type III antifreeze protein isoform HPLC 12; multigene family, thermal hysteresis; 1.25A {Macrozoarces americanus} SCOP: b.85.1.1
Probab=97.99  E-value=4.5e-06  Score=52.79  Aligned_cols=59  Identities=8%  Similarity=0.073  Sum_probs=49.2

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCC
Q ss_conf             99972636889662753413155251337920000211245400003504420227887125555001
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVD  115 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~  115 (263)
                      =+||+++|++|+.|+.+|+.++.-....+|+..+         +.++|+.++.+|.+|++|+.+++-.
T Consensus         5 SiVA~~~I~~G~~lt~~~l~~Krp~p~GI~P~~~---------~~IIGKkak~dI~~d~~I~~dmik~   63 (70)
T 1msi_A            5 SVVANQLIPINTALTLVMMRSEVVTPVGIPAEDI---------PRLVSMQVNRAVPLGTTLMPDMVKG   63 (70)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGGH---------HHHTTCBBSSCBCTTCBCCGGGBTT
T ss_pred             EEEECCCCCCCCEECHHHEEEECCCCCCCCHHHH---------HHHHCHHHHCCCCCCCCCCHHHHHH
T ss_conf             3686663599888268980065478898199999---------9982767616648968728999850


No 4  
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.99  E-value=4.6e-06  Score=52.74  Aligned_cols=62  Identities=19%  Similarity=0.174  Sum_probs=51.4

Q ss_pred             EEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCCC
Q ss_conf             89997263688966275341315525133792000021124540000350442022788712555500146
Q gi|254780728|r   47 NVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDRG  117 (263)
Q Consensus        47 ~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~~  117 (263)
                      .=+||+++|++|+.|+.+|+....-|..-+++..         .+++.|+.+..++.+|++|+.++|...+
T Consensus         7 ~SivA~~~I~kG~~it~~~l~~kr~p~~Gi~p~~---------~~~iiGkk~~~di~~ge~I~~~~i~n~~   68 (79)
T 1wvo_A            7 GSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPED---------IFNLVGKKVLVTVEEDDTIMEELVDNHG   68 (79)
T ss_dssp             CEEEESSCBCTTCBCCGGGEEEETTCCCSSCSSS---------HHHHTTCBBSSCBCTTCBCCGGGBCCCC
T ss_pred             EEEEECCCCCCCCCCCHHHCCCCCCCCCCCCHHH---------HHHHHCHHHHCCCCCCCCCCHHHHHHCC
T ss_conf             8688898338989914865604358999879899---------9998162744233895915899986046


No 5  
>1c89_A RD3, antifreeze protein type III; thermal hysteresis protein, ICE binding protein; NMR {Pachycara brachycephalum} SCOP: b.85.1.1 b.85.1.1 PDB: 1c8a_A 3nla_A 3rdn_A
Probab=97.82  E-value=6.8e-06  Score=51.78  Aligned_cols=61  Identities=7%  Similarity=0.104  Sum_probs=50.6

Q ss_pred             EEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCC
Q ss_conf             0489997263688966275341315525133792000021124540000350442022788712555500
Q gi|254780728|r   45 FINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV  114 (263)
Q Consensus        45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~  114 (263)
                      ..+-+||++||++|+.||.+|+..+.-|..-+++..         .+++.|+.+.+++.+|++|+.+++-
T Consensus        71 ~rksiva~~~i~~G~~~t~~~i~~kr~p~~Gi~p~~---------~~~ilGk~~~~di~~~~~i~~d~i~  131 (134)
T 1c89_A           71 GLKSVVANQLIPINTALTLVMMKAEEVSPKGIPSEE---------ISKLVGMQVNRAVYLDQTLMPDMVK  131 (134)
T ss_dssp             SSEEEEESSCBCSSCCBCTTTCEEEECSSCCCBSSS---------HHHHTTBCCSSCBCSSEECCTTTSC
T ss_pred             CEEEEEECCCCCCCCCCCHHHEEEEECCCCCCCHHH---------HHHHCCCEECCCCCCCCCCCHHHHH
T ss_conf             026899877408988738899336718999989999---------9986391051663896902899960


No 6  
>1ucs_A Antifreeze peptide RD1; small beta barrel, pretzel fold, antifreeze protein; 0.62A {Lycodichthys dearborni} SCOP: b.85.1.1 PDB: 9ame_A 1ame_A 1kde_A 1kdf_A 1gzi_A 1hg7_A 1b7i_A 2spg_A 1jab_A 1b7j_A 2msj_A 1ekl_A 4ame_A 7ame_A 2ame_A 1msj_A 1b7k_A 6ame_A 9msi_A 2jia_A ...
Probab=97.76  E-value=1.9e-05  Score=49.16  Aligned_cols=58  Identities=9%  Similarity=0.108  Sum_probs=47.3

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCC
Q ss_conf             9997263688966275341315525133792000021124540000350442022788712555500
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLV  114 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~  114 (263)
                      =+||+++||+|+.||.+|++++......+|+..         ..+++|+.++..+..++.|.++++-
T Consensus         4 SvVA~~~Ip~gt~lT~~mlt~KV~~P~GIp~e~---------i~~iVGk~v~~~V~~D~~l~~~mvk   61 (64)
T 1ucs_A            4 SVVANQLIPINTALTLIMMKAEVVTPMGIPAEE---------IPKLVGMQVNRAVPLGTTLMPDMVK   61 (64)
T ss_dssp             EEEESSCBCTTCBCCGGGEEEECCSSCCSBGGG---------HHHHTTCBBSSCBCTTCBCCGGGBT
T ss_pred             CEEEEEECCCCCCCCHHHHCEECCCCCCCCHHH---------HHHHHHHHHHCCCCCCCCCCHHHHH
T ss_conf             158611227877546988402046989989899---------9998718984043689721688873


No 7  
>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transferase; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A
Probab=97.07  E-value=0.00058  Score=40.42  Aligned_cols=59  Identities=19%  Similarity=0.239  Sum_probs=47.5

Q ss_pred             EEEEEEECCCCCCCCEECHHHEEEEECCHHH-CCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHC
Q ss_conf             0489997263688966275341315525133-79200002112454000035044202278871255550
Q gi|254780728|r   45 FINVLISKGDLAVGMVVTPNILEWVAFPEEN-VFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKL  113 (263)
Q Consensus        45 ~v~V~va~~di~~G~~It~~dl~~~~~p~~~-~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l  113 (263)
                      ..+-++|+++|++|+.|+.+|+...+ |... +++         ...+.+.|+.+++++.+|++|..++|
T Consensus       289 ~~rs~~a~k~i~kG~~i~~~~i~~~R-p~~g~l~~---------~~~~~i~Gk~~~~~i~~~~~i~~~di  348 (349)
T 2wqp_A          289 AFASVVADKDIKKGELLSGDNLWVKR-PGNGDFSV---------NEYETLFGKVAACNIRKGAQIKKTDI  348 (349)
T ss_dssp             HSCEEEESSCBCTTCBCCTTTEEEES-CTTSSSBG---------GGGGGGTTCBBSSCBCTTCBCCGGGB
T ss_pred             HCEEEEEECCCCCCCEECHHHEEEEC-CCCCCCCH---------HHHHHHCCCEECCCCCCCCCCCHHHC
T ss_conf             14689994613889895689957878-97998499---------99998669177554589796897887


No 8  
>3g8r_A Probable spore coat polysaccharide biosynthesis protein E; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=97.06  E-value=0.00054  Score=40.56  Aligned_cols=63  Identities=13%  Similarity=0.147  Sum_probs=49.5

Q ss_pred             EEEEEEECCCCCCCCEECHHHEEEEECCH-HHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHHCCCC
Q ss_conf             04899972636889662753413155251-3379200002112454000035044202278871255550014
Q gi|254780728|r   45 FINVLISKGDLAVGMVVTPNILEWVAFPE-ENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEKLVDR  116 (263)
Q Consensus        45 ~v~V~va~~di~~G~~It~~dl~~~~~p~-~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~l~~~  116 (263)
                      ..+-++++++|.+|+.|+.+|+.+++=+. ..+++..         .+.+.|+.++.+|.+|++|+.++|-.-
T Consensus       278 ~rrsi~a~k~ikkG~~it~~di~~~rP~~~~gi~~~~---------~~~ilgk~~~~~i~~~~~I~~~dle~~  341 (350)
T 3g8r_A          278 LRRGVFATRPVAAGEALTADNVSFAFPPVEGQLTANE---------WSKYVRYTAKTPIAADAPVMAADLEPV  341 (350)
T ss_dssp             TSCEEEESSCBCTTCBCBTTBEEEEBCCCTTBCBGGG---------CCSSCCEEESSCBCTTCBCBGGGEEEC
T ss_pred             EEEEEEEECCCCCCCEECHHHEEEECCCCCCCCCHHH---------HHHHCCEEECCCCCCCCCCCHHHHHHH
T ss_conf             4368999373388899348882487789989969899---------998659047465589694798993554


No 9  
>1vli_A Spore coat polysaccharide biosynthesis protein SPSE; 2636322, structural genomics, JCSG, protein structure initiative, BSU37870, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6
Probab=96.68  E-value=0.0012  Score=38.45  Aligned_cols=64  Identities=13%  Similarity=0.204  Sum_probs=49.2

Q ss_pred             EEEEEEECCCCCCCCEECHHHEEEEECCH---HHCCCHHCCCCCCCCCCHHCC-CCEEECCCCCCCCCCHHHCCCCCC
Q ss_conf             04899972636889662753413155251---337920000211245400003-504420227887125555001467
Q gi|254780728|r   45 FINVLISKGDLAVGMVVTPNILEWVAFPE---ENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVDRGN  118 (263)
Q Consensus        45 ~v~V~va~~di~~G~~It~~dl~~~~~p~---~~~p~~a~~~~~~~~~~~~~~-G~~~~~~i~~G~~i~~~~l~~~~~  118 (263)
                      ..+-++|+++|++|+.|+.+|+..++ |.   ..+++..         .+.+. |+.++.++.+|++|+.+++...+.
T Consensus       314 ~rrsi~a~~~i~kG~~i~~~di~~~R-Pg~~~~Gi~~~~---------~~~ii~Gk~~~~di~~~~~I~~~di~~k~~  381 (385)
T 1vli_A          314 AYRGIFTTAPIQKGEAFSEDNIAVLR-PGQKPQGLHPRF---------FELLTSGVRAVRDIPADTGIVWDDILLKDS  381 (385)
T ss_dssp             TSCEEEESSCBCTTCBCCTTTEEEEC-CTTSCCCBCGGG---------HHHHHTTCBCSSCBCTTCBCCGGGTSCCC-
T ss_pred             CCEEEEEECCCCCCCEECHHHEEEEC-CCCCCCCCCHHH---------HHHHHCCCEEECCCCCCCCCCHHHHCCCCC
T ss_conf             45799990512889897589946868-778888879899---------999867969906469979868999166578


No 10 
>3k3s_A Altronate hydrolase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 2.15A {Shigella flexneri 2a str}
Probab=91.12  E-value=0.12  Score=26.79  Aligned_cols=52  Identities=23%  Similarity=0.199  Sum_probs=36.1

Q ss_pred             CEEEEEEECCCCCCCCEECHHHEEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHHH
Q ss_conf             704899972636889662753413155251337920000211245400003504420227887125555
Q gi|254780728|r   44 KFINVLISKGDLAVGMVVTPNILEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLEK  112 (263)
Q Consensus        44 ~~v~V~va~~di~~G~~It~~dl~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~~  112 (263)
                      +.=+|.||-+||++|+.|.-++....-  .+.+|.+               =|++..+|.+|++|.+.-
T Consensus        29 p~DNVaVAl~dl~~G~~v~~~~~~i~l--~~~Ip~G---------------HKiAl~dI~~Ge~IiKYG   80 (105)
T 3k3s_A           29 ALDNVAVALADLAEGTEVSVDNQTVTL--RQDVARG---------------HKFALTDIAKGANVIKYG   80 (105)
T ss_dssp             TTCSEEEESSCBCTTCEEEETTEEEEC--SSCBCTT---------------CEEESSCBCTTCEEEETT
T ss_pred             CCCCEEEECCCCCCCCEEEECCEEEEE--CCCCCCC---------------CEEEEEECCCCCEEEECC
T ss_conf             999899967636999999559917998--8668888---------------999841037999759999


No 11 
>3laz_A D-galactarate dehydratase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.92A {Escherichia coli}
Probab=58.66  E-value=3.5  Score=18.11  Aligned_cols=49  Identities=20%  Similarity=0.024  Sum_probs=30.6

Q ss_pred             CEEEEEEECCCCCCCCEECHHH-EEEEECCHHHCCCHHCCCCCCCCCCHHCCCCEEECCCCCCCCCCHH
Q ss_conf             7048999726368896627534-1315525133792000021124540000350442022788712555
Q gi|254780728|r   44 KFINVLISKGDLAVGMVVTPNI-LEWVAFPEENVFDGFIDDVHQPNAMQELDGVLVRVPILKGDPIRLE  111 (263)
Q Consensus        44 ~~v~V~va~~di~~G~~It~~d-l~~~~~p~~~~p~~a~~~~~~~~~~~~~~G~~~~~~i~~G~~i~~~  111 (263)
                      +.=+|.++-+|+..|+.+.-++ +..    .+.+|.+               -|++..+|.+|+.|.+.
T Consensus        23 p~DNVaval~dl~~g~~~~~~~~i~~----~~~Ip~G---------------HKiAl~dI~~G~~I~KY   72 (99)
T 3laz_A           23 DTDNVAIIVNDNGLKAGTRFPDGLEL----IEHIPQG---------------HKVALLDIPANGEIIRY   72 (99)
T ss_dssp             TTCSEEEEESTTCBCTTCBCTTSCBC----SSCBCTT---------------CEEESSCBCTTCEEEET
T ss_pred             CCCCEEEEECCCCCCCCEEECCCEEE----CCCCCCC---------------CEEEECCCCCCCEEEEC
T ss_conf             98989998566777981584588798----8768999---------------98984465898987998


No 12 
>1ltl_A DNA replication initiator (CDC21/CDC54); HET: DNA; 3.00A {Methanothermobacterthermautotrophicus} SCOP: b.40.4.11
Probab=50.33  E-value=9.5  Score=15.58  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             CCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEEC
Q ss_conf             27982799997160103456217898899999506
Q gi|254780728|r  125 LPKGKRAATMDISISSAVGGMIKPNDHVDVVMVRS  159 (263)
Q Consensus       125 l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~~  159 (263)
                      ++.|..+-++.+....-.-+.++|||+|.|.....
T Consensus       191 ~~~G~~Pr~i~v~l~~dLvd~~~pGd~V~i~GI~~  225 (279)
T 1ltl_A          191 LSGGEQPRQITVVLEDDLVDTLTPGDIVRVTGTLR  225 (279)
T ss_dssp             CCSSCCCCEEEEEEEGGGTTCCCTTCEEEEEEEEE
T ss_pred             CCCCCCCEEEEEEEECCCCCCCCCCCEEEEEEEEE
T ss_conf             88999970899999244008577997479999998


No 13 
>2vl6_A SSO MCM N-TER, minichromosome maintenance protein MCM; helicase, hydrolase, zinc-finger, ATP-binding, DNA-binding, ssDNA binding; 2.8A {Sulfolobus solfataricus}
Probab=48.06  E-value=10  Score=15.37  Aligned_cols=35  Identities=20%  Similarity=0.385  Sum_probs=24.3

Q ss_pred             ECCCCCEEEEEECCCCCCCCCCCCCCCEEEEEEEE
Q ss_conf             12798279999716010345621789889999950
Q gi|254780728|r  124 LLPKGKRAATMDISISSAVGGMIKPNDHVDVVMVR  158 (263)
Q Consensus       124 ~l~~g~ravsi~v~~~~~v~g~i~pGd~VDV~~~~  158 (263)
                      .++.|..+-++.+....-.-+.++|||+|.|.-..
T Consensus       203 ~~~~G~~Pr~i~v~l~~dLvd~~~pGd~V~i~Gil  237 (268)
T 2vl6_A          203 EVPSGQLPRQLEIILEDDLVDSARPGDRVKVTGIL  237 (268)
T ss_dssp             GSCTTSCCCEEEEEEEGGGTTSSCTTCEEEEEEEE
T ss_pred             CCCCCCCCCEEEEEEECCCCCCCCCCCEEEEEEEE
T ss_conf             47889999689999966733841799999999999


No 14 
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 2bqz_A*
Probab=44.82  E-value=7.5  Score=16.19  Aligned_cols=15  Identities=20%  Similarity=0.262  Sum_probs=12.7

Q ss_pred             EEEECCCCCCCCEEC
Q ss_conf             999726368896627
Q gi|254780728|r   48 VLISKGDLAVGMVVT   62 (263)
Q Consensus        48 V~va~~di~~G~~It   62 (263)
                      =+.|+++|++|+.|.
T Consensus        43 GlfA~~~I~kg~~I~   57 (166)
T 3f9x_A           43 GVIATKQFSRGDFVV   57 (166)
T ss_dssp             EEEESSCBCTTCEEE
T ss_pred             EEEECCCCCCCCEEE
T ss_conf             898898108999999


No 15 
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A*
Probab=42.74  E-value=10  Score=15.41  Aligned_cols=17  Identities=12%  Similarity=0.206  Sum_probs=13.0

Q ss_pred             EEEECCCCCCCCEECHH
Q ss_conf             99972636889662753
Q gi|254780728|r   48 VLISKGDLAVGMVVTPN   64 (263)
Q Consensus        48 V~va~~di~~G~~It~~   64 (263)
                      =+.|+++|++|+.|..-
T Consensus        17 GvfA~~~i~~g~~i~~~   33 (119)
T 1n3j_A           17 GVFARKSFEKGELVEEC   33 (119)
T ss_dssp             EEEECCCBCSCEEECCC
T ss_pred             EEEECCHHHCCCEECCC
T ss_conf             89889445268655244


No 16 
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=39.82  E-value=12  Score=15.05  Aligned_cols=14  Identities=21%  Similarity=0.472  Sum_probs=6.6

Q ss_pred             CCEEECCCCCCCCC
Q ss_conf             50442022788712
Q gi|254780728|r   95 GVLVRVPILKGDPI  108 (263)
Q Consensus        95 G~~~~~~i~~G~~i  108 (263)
                      |-.++.+|.+|++|
T Consensus        65 GlFA~~~I~kG~~I   78 (192)
T 2w5y_A           65 GLFCKRNIDAGEMV   78 (192)
T ss_dssp             EEEESSCBCTTCEE
T ss_pred             EEEECCCCCCCCEE
T ss_conf             78289824999999


No 17 
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=38.42  E-value=13  Score=14.84  Aligned_cols=13  Identities=15%  Similarity=0.197  Sum_probs=6.2

Q ss_pred             EEECCCCCCCCEE
Q ss_conf             9972636889662
Q gi|254780728|r   49 LISKGDLAVGMVV   61 (263)
Q Consensus        49 ~va~~di~~G~~I   61 (263)
                      +.|.++|++|+.|
T Consensus       147 v~a~~~I~kG~~I  159 (302)
T 1ml9_A          147 VKCPVNIKRGQFV  159 (302)
T ss_dssp             EECSSCBCTTCEE
T ss_pred             EEECCCCCCCCEE
T ss_conf             9679763899999


No 18 
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=38.38  E-value=13  Score=14.83  Aligned_cols=11  Identities=27%  Similarity=0.018  Sum_probs=5.6

Q ss_pred             CCCCCCEEEEE
Q ss_conf             21789889999
Q gi|254780728|r  145 MIKPNDHVDVV  155 (263)
Q Consensus       145 ~i~pGd~VDV~  155 (263)
                      .|..|+.|--|
T Consensus       160 ~I~kG~~I~eY  170 (300)
T 2r3a_A          160 KIKRMSFVMEY  170 (300)
T ss_dssp             CBCTTCEEEEE
T ss_pred             CCCCCCEEEEE
T ss_conf             75999899998


No 19 
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural genomics consortium, SGC, alternative splicing; 2.50A {Homo sapiens}
Probab=34.09  E-value=16  Score=14.27  Aligned_cols=16  Identities=25%  Similarity=0.306  Sum_probs=8.1

Q ss_pred             CCCEEECCCCCCCCCC
Q ss_conf             3504420227887125
Q gi|254780728|r   94 DGVLVRVPILKGDPIR  109 (263)
Q Consensus        94 ~G~~~~~~i~~G~~i~  109 (263)
                      .|-.++++|++|+.|-
T Consensus        32 ~GVFA~~~IpkGt~i~   47 (152)
T 3ihx_A           32 GGVFSKRRIPKRTQFG   47 (152)
T ss_dssp             CSEEESSCBCSSCEEC
T ss_pred             CEEEECCCCCCCCEEE
T ss_conf             6898996059999999


No 20 
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S- adenosyl-L-methionine, structural genomics; HET: SAM; 1.99A {Homo sapiens}
Probab=30.59  E-value=17  Score=14.05  Aligned_cols=14  Identities=29%  Similarity=0.268  Sum_probs=7.8

Q ss_pred             EEECCCCCCCCEEC
Q ss_conf             99726368896627
Q gi|254780728|r   49 LISKGDLAVGMVVT   62 (263)
Q Consensus        49 ~va~~di~~G~~It   62 (263)
                      +.|.++|++|+.|.
T Consensus       131 lfA~~~I~kG~~I~  144 (278)
T 3h6l_A          131 LRAAKDLPSNTFVL  144 (278)
T ss_dssp             EEESSCBCTTCEEE
T ss_pred             EEECCCCCCCCEEE
T ss_conf             97898059999999


No 21 
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=29.91  E-value=18  Score=13.94  Aligned_cols=11  Identities=0%  Similarity=0.087  Sum_probs=6.2

Q ss_pred             CCCCCCEEEEE
Q ss_conf             21789889999
Q gi|254780728|r  145 MIKPNDHVDVV  155 (263)
Q Consensus       145 ~i~pGd~VDV~  155 (263)
                      .|..|+.|--|
T Consensus       156 ~I~kG~~I~eY  166 (299)
T 1mvh_A          156 FAPAGTFITCY  166 (299)
T ss_dssp             CBCTTCEEEEC
T ss_pred             CCCCCCEEEEE
T ss_conf             50799989999


No 22 
>2e84_A High-molecular-weight cytochrome C; cytochrome C3 motifs, electron transport; HET: HEM; 2.70A {Desulfovibrio vulgaris str}
Probab=29.57  E-value=17  Score=14.07  Aligned_cols=27  Identities=15%  Similarity=-0.139  Sum_probs=11.9

Q ss_pred             CCHHHHHH-HHHHHHHHHHHHHHHHHHH
Q ss_conf             95367679-9999999999999999983
Q gi|254780728|r    1 MKLTRLMG-IVVSGVFALVAGIIAMRLV   27 (263)
Q Consensus         1 Mk~~~i~~-l~~~~vla~~a~~~~~~~~   27 (263)
                      |+.||++. +.+.++++++++++++.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~   29 (556)
T 2e84_A            2 MNAKSLLRWAGALVAVAAVTVFGLDARG   29 (556)
T ss_dssp             ----------------------------
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             8731378888999999999888888610


No 23 
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 2.15A {Homo sapiens}
Probab=29.13  E-value=19  Score=13.81  Aligned_cols=14  Identities=7%  Similarity=0.086  Sum_probs=6.8

Q ss_pred             EEECCCCCCCCEEC
Q ss_conf             99726368896627
Q gi|254780728|r   49 LISKGDLAVGMVVT   62 (263)
Q Consensus        49 ~va~~di~~G~~It   62 (263)
                      +.|+++|++|+.|.
T Consensus        38 VfA~~~I~kgt~ig   51 (151)
T 3db5_A           38 VWTGETIPVRTCFG   51 (151)
T ss_dssp             EEESSCBCTTCEEC
T ss_pred             EEECCEECCCCEEE
T ss_conf             99898608999999


No 24 
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3fpd_A* 3k5k_A* 2o8j_A*
Probab=28.22  E-value=20  Score=13.66  Aligned_cols=11  Identities=27%  Similarity=0.259  Sum_probs=6.2

Q ss_pred             ECCCCCCCCEE
Q ss_conf             72636889662
Q gi|254780728|r   51 SKGDLAVGMVV   61 (263)
Q Consensus        51 a~~di~~G~~I   61 (263)
                      .-.||..|..-
T Consensus        31 ~~~DiS~G~E~   41 (287)
T 3hna_A           31 VSRDIARGYER   41 (287)
T ss_dssp             EESCTTTTCSS
T ss_pred             EEHHHCCCCCC
T ss_conf             60540699778


No 25 
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=24.20  E-value=26  Score=13.02  Aligned_cols=15  Identities=20%  Similarity=0.390  Sum_probs=7.1

Q ss_pred             CCEEECCCCCCCCCC
Q ss_conf             504420227887125
Q gi|254780728|r   95 GVLVRVPILKGDPIR  109 (263)
Q Consensus        95 G~~~~~~i~~G~~i~  109 (263)
                      |-.++++|++|+.|-
T Consensus        42 GVFA~~~I~kGt~ig   56 (170)
T 3ep0_A           42 GIFSKTWIKAGTEMG   56 (170)
T ss_dssp             EEEESSCBCTTCEEE
T ss_pred             EEEECCEECCCCEEE
T ss_conf             895898218999999


No 26 
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative; 2.10A {Haemophilus influenzae 86-028np} SCOP: d.15.3.4
Probab=22.56  E-value=25  Score=13.15  Aligned_cols=19  Identities=11%  Similarity=0.219  Sum_probs=13.5

Q ss_pred             CCCCCCCCCEEEEEEEECC
Q ss_conf             4562178988999995068
Q gi|254780728|r  142 VGGMIKPNDHVDVVMVRSL  160 (263)
Q Consensus       142 v~g~i~pGd~VDV~~~~~~  160 (263)
                      ....|+.||||.||=....
T Consensus        70 ld~~L~~GDRVEIYRPL~~   88 (97)
T 2hj1_A           70 LTDVLKEGDRIEIYRPLLA   88 (97)
T ss_dssp             TTCBCCTTCEEEECCCCC-
T ss_pred             CCCCCCCCCEEEEECCCCC
T ss_conf             8881789999999456565


No 27 
>3h9i_A Cation efflux system protein CUSB; three-helix bundle, beta barrel, copper, copper transport, ION transport, transport, transport protein; 3.40A {Escherichia coli k-12} PDB: 3h94_A 3h9t_B
Probab=21.01  E-value=17  Score=14.16  Aligned_cols=11  Identities=27%  Similarity=0.072  Sum_probs=5.5

Q ss_pred             CCHHHHHHHHH
Q ss_conf             95367679999
Q gi|254780728|r    1 MKLTRLMGIVV   11 (263)
Q Consensus         1 Mk~~~i~~l~~   11 (263)
                      ||+..++..++
T Consensus         1 mkk~~~~~~~~   11 (407)
T 3h9i_A            1 MKKIALIIGSM   11 (407)
T ss_dssp             -----------
T ss_pred             CCCHHHHHHHH
T ss_conf             95069999999


No 28 
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=20.97  E-value=30  Score=12.63  Aligned_cols=18  Identities=11%  Similarity=-0.105  Sum_probs=15.0

Q ss_pred             EEEEEEECCCCCCCCEEC
Q ss_conf             048999726368896627
Q gi|254780728|r   45 FINVLISKGDLAVGMVVT   62 (263)
Q Consensus        45 ~v~V~va~~di~~G~~It   62 (263)
                      .=+-++|+|||++|+.|=
T Consensus        17 kGR~lvAtrdi~~Ge~il   34 (490)
T 3n71_A           17 KGRGLKATKEFWAADVIF   34 (490)
T ss_dssp             SCEEEEESSCBCTTCEEE
T ss_pred             CCCEEEECCCCCCCCEEE
T ss_conf             834798897459899999


No 29 
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=20.74  E-value=30  Score=12.61  Aligned_cols=39  Identities=15%  Similarity=0.217  Sum_probs=26.9

Q ss_pred             CEEECCCCCEEEEEECCCCCC-C-----CCCCCCCCEEEEEEEEC
Q ss_conf             002127982799997160103-4-----56217898899999506
Q gi|254780728|r  121 LSSLLPKGKRAATMDISISSA-V-----GGMIKPNDHVDVVMVRS  159 (263)
Q Consensus       121 ls~~l~~g~ravsi~v~~~~~-v-----~g~i~pGd~VDV~~~~~  159 (263)
                      ....++.|.+.-++.|....- +     ++.++|||+|.|.-...
T Consensus       124 ~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~~~PGd~v~v~Gi~~  168 (506)
T 3f8t_A          124 VVREVRGAERLEHAIVDTGSELVAVRLHGHRLGPGLRVEILGIVR  168 (506)
T ss_dssp             EEEEEEESSSEEEEEEECSSSEEEEECTTCCCCTTCEEEEEEEEE
T ss_pred             CCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEE
T ss_conf             655588888885589995365010125667479899899999993


No 30 
>2a3m_A COG3005: nitrate/TMAO reductases, membrane-bound tetraheme cytochrome C subunit; electron transport; HET: HEM; 1.50A {Desulfovibrio desulfuricans subsp} PDB: 2a3p_A*
Probab=20.49  E-value=17  Score=14.05  Aligned_cols=12  Identities=17%  Similarity=0.307  Sum_probs=6.0

Q ss_pred             CCHHHHHHHHHH
Q ss_conf             953676799999
Q gi|254780728|r    1 MKLTRLMGIVVS   12 (263)
Q Consensus         1 Mk~~~i~~l~~~   12 (263)
                      ||++.+.+++++
T Consensus         1 mkk~l~~~~~~~   12 (130)
T 2a3m_A            1 MRKSLFAVMVLA   12 (130)
T ss_dssp             ------------
T ss_pred             CHHHHHHHHHHH
T ss_conf             904999999999


Done!