HHSEARCH alignment of GI: 254780728 and SCOP domain: d1vlia1

Alignment

Probab=97.11  E-value=0.00021  Score=41.53  Aligned_cols=58  Identities=14%  Similarity=0.220  Sum_probs=46.3

Q ss_pred             EEEECCCCCCCCEECHHHEEEEECCH---HHCCCHHCCCCCCCCCCHHCC-CCEEECCCCCCCCCCHHHCCC
Q ss_conf             99972636889662753413155251---337920000211245400003-504420227887125555001
Q gi|254780728|r   48 VLISKGDLAVGMVVTPNILEWVAFPE---ENVFDGFIDDVHQPNAMQELD-GVLVRVPILKGDPIRLEKLVD  115 (263)
Q Consensus        48 V~va~~di~~G~~It~~dl~~~~~p~---~~~p~~a~~~~~~~~~~~~~~-G~~~~~~i~~G~~i~~~~l~~  115 (263)
                      -++|++||.+|+.|+.+|+...+ |.   .-+++..         .+.+. |+.+..++.+|++|+.++|..
T Consensus         9 Si~a~kdi~kG~~it~~di~~~R-Pg~~~~Gi~p~~---------~~~ii~Gkk~~~~i~~g~~i~~~di~~   70 (72)
T d1vlia1           9 GIFTTAPIQKGEAFSEDNIAVLR-PGQKPQGLHPRF---------FELLTSGVRAVRDIPADTGIVWDDILL   70 (72)
T ss_dssp             EEEESSCBCTTCBCCTTTEEEEC-CTTSCCCBCGGG---------HHHHHTTCBCSSCBCTTCBCCGGGTSC
T ss_pred             EEEEECCCCCCCCCCHHHEEEEC-CCCCCCCCCHHH---------HHHHHCCCEECCCCCCCCCCCHHHCCC
T ss_conf             38891422888991678867877-888888859899---------999767948846338969369999020

SCOP domain information

class: All beta proteins
fold: beta-clip
superfamily: AFP III-like domain
family: AFP III-like domain
domain: Spore coat polysaccharide biosynthesis protein SpsE, C-terminal domain
species: Bacillus subtilis [TaxId: 1423]